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Metabolic Incorporation of latent fast reacting thioeSTERs

Birgit Wiltschi (ORCID: 0000-0001-5230-0951)
  • Grant DOI 10.55776/I5800
  • Funding program Principal Investigator Projects International
  • Status ended
  • Start February 1, 2022
  • End December 31, 2025
  • Funding amount € 542,504

France

Disciplines

Biology (25%); Chemistry (75%)

Keywords

  • Latent Fast-Reacting Thioester,
  • Native Chemical Ligation,
  • Genetic Code Expansion,
  • Non-Canonical Amino Acid,
  • Bioorthogonal Chemistry,
  • Protein Engineering
Abstract Final report

Single protein building blocks, so-called protein monomers, can be genetically engineered so that they polycondensate into rubber-like elastic (elastomeric) protein biopolymers. These elastomeric protein biopolymers are innovative raw materials for promising biomedical applications and for materials science. In recent years, the production of elastomeric protein biopolymers has been the subject of intense research. Despite significant advances, we still need versatile and efficient approaches to further improve and diversify the properties of the targeted materials. The goal of this project is to combine concepts from chemistry and synthetic biology to develop a fully integrated approach for the polycondensation of protein monomers. To achieve this goal, protein monomers will be equipped with activatable and extremely fast- reacting thioester groups at defined positions. We expect that the tremendous reactivity and chemoselectivity of the thioester groups will improve the single-chain polycondensation of the monomeric protein building blocks. In particular, the robustness of the approach will be challenged through the recombinant production of a titin protein monomer containing the thioester groups, which polymerizes to form a biopolymer endowed with muscle-like mechanical properties.

Metabolic incorporation of fastreacting oxalyl thioesters: an integrated solution toward the production of labeled proteins and biopolymers Project at a glance Proteins can be turned into ecofriendly, biocompatible materials-well suited for medicine and industry-but their diversity has been limited. The MISTER project connects chemistry with synthetic biology to create new "docking sites" in proteins, enabling precise labeling, linking, and assembly into robust proteinbased biopolymers. The idea Thioesters are valuable connectors for joining (poly)peptides by native chemical ligation. However, their use in conjugation remains limited by an unfavorable trade-off between stability and reactivity in aqueous media. MISTER addresses this by introducing a novel, activatable thioester switch called oxoSEA. This group is highly reactive toward -aminothiols but stays stable until activation. Then, it delivers highspeed, highselectivity reactions-streamlining protein labeling and linkage for research, medicine, and biomaterials. What was achieved? New building blocks at scale: A stable Lys(oxoSEA) building block was produced at gram scale, as both a protected precursor and in free form. Fast and selective reactions: Couplings proceed quickly at very low concentrations, including in complex samples, with ondemand activation under gentle, reducing conditions. Precise installation strategies: Chemical/enzymatic: Proteins (e.g., ubiquitin) were selectively equipped and efficiently linked; using Sortase A, conversions above 90% were achieved. Biological: The oxoSEA building block was genetically incorporated into bacterial proteins-an important step toward producing labeled proteins directly in cells. First materials: Chainlike protein biopolymers inspired by the muscle protein titin were built from bifunctional protein domains. A known hurdle-undesired ring formation-was significantly reduced using alternative, especially enzymatic, approaches. Why it matters For medicine: Proteins can be labeled or joined with pinpoint precision, supporting better diagnostics, targeted drug delivery, and tailored biomaterials. For sustainable materials: New protein polymers are biocompatible and degradable, with potential to partially replace petroleumbased plastics. For research: The integrated platform unites fast, controllable chemistry with synthetic biology, creating a versatile toolbox for many applications. What's next The chemistry-biology interface will be expanded, installation into more complex proteins streamlined, and polymer architectures optimized to reach higher molecular weights and new properties. In parallel, core reaction principles will be further clarified, paving the way for robust, scalable applications in biotechnology, protein chemistry, and materials science.

Research institution(s)
  • Universität für Bodenkultur Wien - 100%
International project participants
  • Benoît Snella, Institut Pasteur de Lille -Center of Infection and Immunity of Lille - France
  • Magalie Sénéchal, Institut Pasteur de Lille -Center of Infection and Immunity of Lille - France
  • Vangelis Agouridas - France, project partner
  • Oleg Melnyk, Université de Lille 2 - Droit et Santé - France

Research Output

  • 10 Citations
  • 7 Publications
  • 1 Methods & Materials
  • 5 Datasets & models
  • 1 Scientific Awards
Publications
  • 2026
    Title MISTER-Metabolic Incorporation of Latent Fast Reacting Thioesters
    Type PhD Thesis
    Author Arshia, Arasteh Kani
  • 2025
    Title Residue-Specific Incorporation of Noncanonical Amino Acids in Auxotrophic Hosts: Quo Vadis?
    DOI 10.1021/acs.chemrev.4c00280
    Type Journal Article
    Author Lacombe C
    Journal Chemical reviews
    Pages 4840-4932
  • 2025
    Title Synthetic Biology of Proteins
    Type Postdoctoral Thesis
    Author Pd Dr. Birgit Wiltschi
  • 2024
    Title Protocol for protein modification using oxalyl thioester-mediated chemoselective ligation.
    DOI 10.1016/j.xpro.2024.103390
    Type Journal Article
    Author Terzani F
    Journal STAR protocols
    Pages 103390
  • 2023
    Title Incorporation of a Highly Reactive Oxalyl Thioester-Based Interacting Handle into Proteins.
    DOI 10.1021/acs.orglett.3c01846
    Type Journal Article
    Author Desmet R
    Journal Organic letters
    Pages 5117-5122
  • 2022
    Title Redox-Controlled Chemical Protein Synthesis: Sundry Shades of Latency
    DOI 10.1021/acs.accounts.2c00436
    Type Journal Article
    Author Agouridas V
    Journal Accounts of Chemical Research
    Pages 2685-2697
    Link Publication
  • 2022
    Title Fast Protein Modification in the Nanomolar Concentration Range Using an Oxalyl Amide as Latent Thioester**
    DOI 10.1002/ange.202204992
    Type Journal Article
    Author Snella B
    Journal Angewandte Chemie
    Link Publication
Methods & Materials
  • 0
    Title FACS-Based Screening of Functional Aminoacyl-tRNA Synthetases
    Type Technology assay or reagent
Datasets & models
  • 2024 Link
    Title Protocol for protein modification using oxalyl thioester-mediated chemoselective ligation
    DOI 10.1016/j.xpro.2024.103390
    Type Database/Collection of data
    Public Access
    Link Link
  • 2024 Link
    Title Shedding Light on Non-Canonical Amino Acid Incorporation: The Bright (and Not-So-Bright) Side of Using Dual Fluorescence Proteins
    DOI 10.5281/zenodo.20120542
    Type Database/Collection of data
    Public Access
    Link Link
  • 2022 Link
    Title CCDC 2164270: Experimental Crystal Structure Determination
    DOI 10.5517/ccdc.csd.cc2bn359
    Type Database/Collection of data
    Public Access
    Link Link
  • 2022 Link
    Title Evolution of orthogonal aminoacyl tRNA synthetase/suppressor tRNA pairs in E. coli
    DOI 10.5281/zenodo.20119813
    Type Database/Collection of data
    Public Access
    Link Link
  • 2022 Link
    Title Fast protein modification in the nanomolar concentration range using an oxalyl amide as latent thioester
    DOI 10.1002/anie.202204992
    Type Database/Collection of data
    Public Access
    Link Link
Scientific Awards
  • 2026
    Title BIW_BSE26
    Type Personally asked as a key note speaker to a conference
    Level of Recognition Continental/International

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