Metabolic Incorporation of latent fast reacting thioeSTERs
France
Disciplines
Biology (25%); Chemistry (75%)
Keywords
- Latent Fast-Reacting Thioester,
- Native Chemical Ligation,
- Genetic Code Expansion,
- Non-Canonical Amino Acid,
- Bioorthogonal Chemistry,
- Protein Engineering
Single protein building blocks, so-called protein monomers, can be genetically engineered so that they polycondensate into rubber-like elastic (elastomeric) protein biopolymers. These elastomeric protein biopolymers are innovative raw materials for promising biomedical applications and for materials science. In recent years, the production of elastomeric protein biopolymers has been the subject of intense research. Despite significant advances, we still need versatile and efficient approaches to further improve and diversify the properties of the targeted materials. The goal of this project is to combine concepts from chemistry and synthetic biology to develop a fully integrated approach for the polycondensation of protein monomers. To achieve this goal, protein monomers will be equipped with activatable and extremely fast- reacting thioester groups at defined positions. We expect that the tremendous reactivity and chemoselectivity of the thioester groups will improve the single-chain polycondensation of the monomeric protein building blocks. In particular, the robustness of the approach will be challenged through the recombinant production of a titin protein monomer containing the thioester groups, which polymerizes to form a biopolymer endowed with muscle-like mechanical properties.
Metabolic incorporation of fastreacting oxalyl thioesters: an integrated solution toward the production of labeled proteins and biopolymers Project at a glance Proteins can be turned into ecofriendly, biocompatible materials-well suited for medicine and industry-but their diversity has been limited. The MISTER project connects chemistry with synthetic biology to create new "docking sites" in proteins, enabling precise labeling, linking, and assembly into robust proteinbased biopolymers. The idea Thioesters are valuable connectors for joining (poly)peptides by native chemical ligation. However, their use in conjugation remains limited by an unfavorable trade-off between stability and reactivity in aqueous media. MISTER addresses this by introducing a novel, activatable thioester switch called oxoSEA. This group is highly reactive toward -aminothiols but stays stable until activation. Then, it delivers highspeed, highselectivity reactions-streamlining protein labeling and linkage for research, medicine, and biomaterials. What was achieved? New building blocks at scale: A stable Lys(oxoSEA) building block was produced at gram scale, as both a protected precursor and in free form. Fast and selective reactions: Couplings proceed quickly at very low concentrations, including in complex samples, with ondemand activation under gentle, reducing conditions. Precise installation strategies: Chemical/enzymatic: Proteins (e.g., ubiquitin) were selectively equipped and efficiently linked; using Sortase A, conversions above 90% were achieved. Biological: The oxoSEA building block was genetically incorporated into bacterial proteins-an important step toward producing labeled proteins directly in cells. First materials: Chainlike protein biopolymers inspired by the muscle protein titin were built from bifunctional protein domains. A known hurdle-undesired ring formation-was significantly reduced using alternative, especially enzymatic, approaches. Why it matters For medicine: Proteins can be labeled or joined with pinpoint precision, supporting better diagnostics, targeted drug delivery, and tailored biomaterials. For sustainable materials: New protein polymers are biocompatible and degradable, with potential to partially replace petroleumbased plastics. For research: The integrated platform unites fast, controllable chemistry with synthetic biology, creating a versatile toolbox for many applications. What's next The chemistry-biology interface will be expanded, installation into more complex proteins streamlined, and polymer architectures optimized to reach higher molecular weights and new properties. In parallel, core reaction principles will be further clarified, paving the way for robust, scalable applications in biotechnology, protein chemistry, and materials science.
- Benoît Snella, Institut Pasteur de Lille -Center of Infection and Immunity of Lille - France
- Magalie Sénéchal, Institut Pasteur de Lille -Center of Infection and Immunity of Lille - France
- Vangelis Agouridas - France, project partner
- Oleg Melnyk, Université de Lille 2 - Droit et Santé - France
Research Output
- 10 Citations
- 7 Publications
- 1 Methods & Materials
- 5 Datasets & models
- 1 Scientific Awards
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2026
Title MISTER-Metabolic Incorporation of Latent Fast Reacting Thioesters Type PhD Thesis Author Arshia, Arasteh Kani -
2025
Title Residue-Specific Incorporation of Noncanonical Amino Acids in Auxotrophic Hosts: Quo Vadis? DOI 10.1021/acs.chemrev.4c00280 Type Journal Article Author Lacombe C Journal Chemical reviews Pages 4840-4932 -
2025
Title Synthetic Biology of Proteins Type Postdoctoral Thesis Author Pd Dr. Birgit Wiltschi -
2024
Title Protocol for protein modification using oxalyl thioester-mediated chemoselective ligation. DOI 10.1016/j.xpro.2024.103390 Type Journal Article Author Terzani F Journal STAR protocols Pages 103390 -
2023
Title Incorporation of a Highly Reactive Oxalyl Thioester-Based Interacting Handle into Proteins. DOI 10.1021/acs.orglett.3c01846 Type Journal Article Author Desmet R Journal Organic letters Pages 5117-5122 -
2022
Title Redox-Controlled Chemical Protein Synthesis: Sundry Shades of Latency DOI 10.1021/acs.accounts.2c00436 Type Journal Article Author Agouridas V Journal Accounts of Chemical Research Pages 2685-2697 Link Publication -
2022
Title Fast Protein Modification in the Nanomolar Concentration Range Using an Oxalyl Amide as Latent Thioester** DOI 10.1002/ange.202204992 Type Journal Article Author Snella B Journal Angewandte Chemie Link Publication
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Title FACS-Based Screening of Functional Aminoacyl-tRNA Synthetases Type Technology assay or reagent
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2024
Link
Title Protocol for protein modification using oxalyl thioester-mediated chemoselective ligation DOI 10.1016/j.xpro.2024.103390 Type Database/Collection of data Public Access Link Link -
2024
Link
Title Shedding Light on Non-Canonical Amino Acid Incorporation: The Bright (and Not-So-Bright) Side of Using Dual Fluorescence Proteins DOI 10.5281/zenodo.20120542 Type Database/Collection of data Public Access Link Link -
2022
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Title CCDC 2164270: Experimental Crystal Structure Determination DOI 10.5517/ccdc.csd.cc2bn359 Type Database/Collection of data Public Access Link Link -
2022
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Title Evolution of orthogonal aminoacyl tRNA synthetase/suppressor tRNA pairs in E. coli DOI 10.5281/zenodo.20119813 Type Database/Collection of data Public Access Link Link -
2022
Link
Title Fast protein modification in the nanomolar concentration range using an oxalyl amide as latent thioester DOI 10.1002/anie.202204992 Type Database/Collection of data Public Access Link Link
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2026
Title BIW_BSE26 Type Personally asked as a key note speaker to a conference Level of Recognition Continental/International