QMCF MD Simulations of Composite Solutes
QMCF MD Simulations of Composite Solutes
Disciplines
Chemistry (100%)
Keywords
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Molecular Dynamics,
Quantum Mechanics,
Simulations,
Solvation,
Metal Complexes
In the past decade, ab initio QM/MM molecular dynamics simulations, where the chemically most relevant subregion of the system is treated at Hartree-Fock or even higher level, while the remaining system is described by ab initio generated 2- and 3-body potential functions, have proven a most successful tool to reveal the structural details and the ultrafast dynamics of pure liquids and ions solvated in these liquids. Numerous properties of solvated species hardly accessible by contemporary experimental methods have been evaluated with the help of such simulations. The application of this method has its intrinsic limits, however, when more composite solutes, e.g. complexes with various ligands, become the focus of interest, as the construction of the necessary 2- and 3- body interaction potential energy surfaces and their subsequent fitting to analytical functions turns into a most tedious and sometimes even ambiguous procedure. A new simulation method recently developed by the applicant, the `QMCF MD` approach, overcomes this difficulty and allows ab initio simulations of solvated systems without the need of any such potential functions except those for solvent-solvent interactions. The basis of this method is a sufficiently large quantum mechanical (QM) region including the solute plus a full solvation layer, a large outer solvent box described classically (MM), but also incorporated as a perturbation (charge field, CF) into the QM Hamiltonian, and the explicit consideration of the fluctuating charges in the QM region in the evaluation of interactions between QM region and MM region. In the present project, this method should be further developed and applied to numerous composite solutes difficult to access by conventional QM/MM simulations. These solutes will rank from composite ions such as TiO2+ (resp. Ti(OH)2 2+ ), ClO4 - and Hg2 2+ to metal ion - ligand complexes of the MLn type, L being ligands such as Cl - , CN - , CO, NO or simple chelate formers, or a mixture of such ligands. These applications are expected to open the way to accurate simulations of more complex model systems of biologically relevant molecules such as the active centres of metalloenzymes, and thus to the evaluation of structure and, in particular, the fast dynamics of such systems in the aqueous environment of organisms
A large number of publications have appeared in international scientific journals of high impact, and 3 invited book contributions bring the total number of publications achieved in this project to 78 (without posters, Ph.D. And M.Sc. Theses). Further publications are submitted or in preparation. Numerous international visitors have shown much interest in the ongoing projects, and their visits have served to continue existing or start new co-operations. In this context a very valuable extension of the project work is seen in the co-operation with one of the most renowned experimental groups studying ions in solution, the group of Prof. Ingmar Persson in Uppsala/Sweden,and a cooperation with Prof. Enriques Sanchez-Marcos` group at the University of Sevilla/Spain. The work in the project has covered a wide range of hydrated metal ions from all parts of the periodic system of elements. It could also be shown that the new methodology developed in this project is capable of treating electronic excitation of the ions in solution, opening an access to realistic UV/VIS spectra of these ions. Further, the applicability of the method to treat solvation of neutral molecules and anions with weak solvent binding through H bonds has been demonstrated, and ultrafast dynamics of hydrolysing systems were also shown to be treatable. A large number of project coworkers have obtained their M.Sc. and/or Ph.D. Degree as a result of their thesis work within this project. The results of this project could be presented in several international conferences in the form of invited plenary and session lectures and posters.
- Universität Innsbruck - 100%
Research Output
- 681 Citations
- 27 Publications
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2008
Title Molecular Dynamics Simulation Methods including Quantum Effects DOI 10.1007/978-1-4020-8270-2_10 Type Book Chapter Author Hofer T Publisher Springer Nature Pages 247-278 -
2008
Title Quantum mechanical simulation studies of molecular vibrations and dynamics of oxo-anions in water DOI 10.1016/j.chemphys.2008.02.045 Type Journal Article Author Pribil A Journal Chemical Physics Pages 182-185 -
2012
Title Hydration of trivalent lanthanum revisited – An ab initio QMCF-MD approach DOI 10.1016/j.cplett.2012.03.065 Type Journal Article Author Lutz O Journal Chemical Physics Letters Pages 50-54 Link Publication -
2011
Title Carbon dioxide in aqueous environment—A quantum mechanical charge field molecular dynamics study DOI 10.1002/qua.22640 Type Journal Article Author Moin S Journal International Journal of Quantum Chemistry Pages 1370-1378 -
2010
Title Structural and Dynamic Aspects of Hydration of HAsO4 -2: An ab initio QMCF MD Simulation DOI 10.1021/jp911860y Type Journal Article Author Bhattacharjee A Journal The Journal of Physical Chemistry B Pages 3921-3926 -
2010
Title QM/MM MD Simulations of Iodide Ion (I-) in Aqueous Solution: A Delicate Balance between Ion-Water and Water-Water H-Bond Interactions DOI 10.1021/jp910435d Type Journal Article Author Tongraar A Journal The Journal of Physical Chemistry A Pages 4334-4339 -
2010
Title Determination of Structure and Dynamics of the Solvated Bisulfide (HS-) Ion by ab Initio QMCF Molecular Dynamics DOI 10.1021/jp104856q Type Journal Article Author Kritayakornupong C Journal The Journal of Physical Chemistry B Pages 12883-12887 -
2010
Title Structural and Dynamical Properties and Vibrational Spectra of Bisulfate Ion in Water: A Study by Ab Initio Quantum Mechanical Charge Field Molecular Dynamics DOI 10.1021/jp105181n Type Journal Article Author Vchirawongkwin V Journal The Journal of Physical Chemistry B Pages 11561-11569 -
2010
Title QM/MM Dynamics of CH3COO--Water Hydrogen Bonds in Aqueous Solution DOI 10.1021/jp105671f Type Journal Article Author Payaka A Journal The Journal of Physical Chemistry A Pages 10443-10453 -
2010
Title Structural and Dynamical Aspects of the Unsymmetric Hydration of Sb(III): An ab initio Quantum Mechanical Charge Field Molecular Dynamics Simulation DOI 10.1021/ic901737y Type Journal Article Author Lim L Journal Inorganic Chemistry Pages 2132-2140 -
2010
Title Structure and Dynamics of the Chromate Ion in Aqueous Solution. An ab Initio QMCF-MD Simulation DOI 10.1021/ic101001e Type Journal Article Author Hinteregger E Journal Inorganic Chemistry Pages 7964-7968 -
2010
Title A Quantum Mechanical Charge Field Molecular Dynamics Study of Fe2+ and Fe3+ Ions in Aqueous Solutions DOI 10.1021/ic1002572 Type Journal Article Author Moin S Journal Inorganic Chemistry Pages 5101-5106 -
2009
Title An ab initio quantum mechanical charge field molecular dynamics simulation of a dilute aqueous HCl solution DOI 10.1002/jcc.21469 Type Journal Article Author Kritayakornupong C Journal Journal of Computational Chemistry Pages 1785-1792 -
2009
Title Ab Initio quantum mechanical charge field study of hydrated bicarbonate ion: Structural and dynamical properties DOI 10.1002/jcc.21308 Type Journal Article Author Vchirawongkwin V Journal Journal of Computational Chemistry Pages 249-257 -
2009
Title Temperature dependence of structure and dynamics of the hydrated Ca2+ ion according to ab initio quantum mechanical charge field and classical molecular dynamics DOI 10.1002/jcc.21405 Type Journal Article Author Lim L Journal Journal of Computational Chemistry Pages 1195-1200 Link Publication -
2009
Title Hydrated germanium (II): Irregular structural and dynamical properties revealed by a quantum mechanical charge field molecular dynamics study DOI 10.1002/jcc.21315 Type Journal Article Author Azam S Journal Journal of Computational Chemistry Pages 278-285 -
2010
Title Hydrolytic conversion of AsO -34 to HAsO -24 : a QMCF MD study DOI 10.1039/b927138d Type Journal Article Author Bhattacharjee A Journal Physical Chemistry Chemical Physics Pages 6244-6246 -
2010
Title The stability of [Zn(NH 3 ) 4 ] 2+ in water : A quantum mechanical/molecular mechanical molecular dynamics study DOI 10.1039/c002021d Type Journal Article Author Fatmi M Journal Physical Chemistry Chemical Physics Pages 9713-9718 -
2010
Title Structure and dynamics of hydrated Ag+: An ab initio quantum mechanical/charge field simulation DOI 10.1016/j.cplett.2010.10.008 Type Journal Article Author Blauth C Journal Chemical Physics Letters Pages 251-255 -
2010
Title The influence of the lone electron pair on structure and dynamics of divalent group IV metal ion hydrates DOI 10.1016/j.molliq.2010.07.013 Type Journal Article Author Rode B Journal Journal of Molecular Liquids Pages 79-82 -
2010
Title Structure and dynamics of the UO +2 ion in aqueous solution: an ab initio QMCF-MD study DOI 10.1039/c003169k Type Journal Article Author Frick R Journal Physical Chemistry Chemical Physics Pages 11736-11743 -
2007
Title Solvation energy and vibrational spectrum of sulfate in water – An ab initio quantum mechanical simulation DOI 10.1016/j.cplett.2007.06.040 Type Journal Article Author Vchirawongkwin V Journal Chemical Physics Letters Pages 152-157 -
2007
Title Structure and Dynamics of Sulfate Ion in Aqueous Solution?An ab initio QMCF MD Simulation and Large Angle X-ray Scattering Study DOI 10.1021/jp0702402 Type Journal Article Author Vchirawongkwin V Journal The Journal of Physical Chemistry B Pages 4150-4155 -
2007
Title Quantum mechanical charge field molecular dynamics simulation of the TiO2+ ion in aqueous solution DOI 10.1002/jcc.20659 Type Journal Article Author Fatmi M Journal Journal of Computational Chemistry Pages 1704-1710 -
2007
Title Structure and dynamics of the hydrated palladium(II) ion in aqueous solution A QMCF MD simulation and EXAFS spectroscopic study DOI 10.1016/j.cplett.2007.08.009 Type Journal Article Author Hofer T Journal Chemical Physics Letters Pages 193-197 -
2006
Title Stability of Different Zinc(II)-Diamine Complexes in Aqueous Solution with Respect to Structure and Dynamics: A QM/MM MD Study DOI 10.1021/jp0654213 Type Journal Article Author Fatmi M Journal The Journal of Physical Chemistry B Pages 151-158 -
2006
Title Sr(II) in Water: A Labile Hydrate with a Highly Mobile Structure DOI 10.1021/jp0638033 Type Journal Article Author Hofer T Journal The Journal of Physical Chemistry B Pages 20409-20417