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Functional characterization of the S. pombe genome

Functional characterization of the S. pombe genome

Juraj Gregan (ORCID: 0000-0002-2989-8374)
  • Grant DOI 10.55776/P20444
  • Funding program Principal Investigator Projects
  • Status ended
  • Start July 1, 2008
  • End June 30, 2012
  • Funding amount € 206,808
  • Project website

Disciplines

Biology (100%)

Keywords

    Genome, Pombe, Knock-Out, Chromosome Segregation, High-Throughput, Yeast

Final report

The fission yeast Schizosaccharomyces pombe is an important model organism for studying various aspects of biology. Sequencing of the S. pombe genome revealed almost 5.000 open reading frames including many genes with significant similarity to human disease genes. The functions of many open reading frames are unknown. A systematic whole-genome approach is required to determine their function. The KRIBB-Bioneer-CRUK consortium has almost completed the systematic gene knock-out strain collection for fission yeast and is currently analysing the phenotypes of generated mutants. However, some genes could not be deleted using a conventional knock-out technique. We have recently developed an efficient knockout strategy based on plasmids that contain large regions homologous to the target gene. In this project, we used this knockout strategy to delete genes which could not be deleted by the KRIBB-Bioneer-CRUK consortium. This allowed us to create almost complete collection of fission yeast knockout strains which will be a valuable tool for analysis of the fission yeast biology.

Research institution(s)
  • Universität Wien - 100%
International project participants
  • Paul Nurse, Francis Crick Institute

Research Output

  • 498 Citations
  • 11 Publications
Publications
  • 2011
    Title Sgo1 is required for co-segregation of sister chromatids during achiasmate meiosis I
    DOI 10.4161/cc.10.6.15032
    Type Journal Article
    Author Dudas A
    Journal Cell Cycle
    Pages 951-955
    Link Publication
  • 2010
    Title S. pombe genome deletion project: An update
    DOI 10.4161/cc.9.12.11914
    Type Journal Article
    Author Spirek M
    Journal Cell Cycle
    Pages 2399-2402
    Link Publication
  • 2010
    Title Laser microsurgery provides evidence for merotelic kinetochore attachments in fission yeast cells lacking Pcs1 or Clr4
    DOI 10.4161/cc.9.19.13233
    Type Journal Article
    Author Rumpf C
    Journal Cell Cycle
    Pages 3997-4004
    Link Publication
  • 2010
    Title High-throughput knockout screen in Schizosaccharomyces pombe identifies a novel gene required for efficient homolog disjunction during meiosis I
    DOI 10.4161/cc.9.9.11526
    Type Journal Article
    Author Rumpf C
    Journal Cell Cycle
    Pages 1802-1808
    Link Publication
  • 2009
    Title An improved strategy for tandem affinity purification-tagging of Schizosaccharomyces pombe genes
    DOI 10.1002/pmic.200800948
    Type Journal Article
    Author Cipak L
    Journal PROTEOMICS
    Pages 4825-4828
    Link Publication
  • 2011
    Title Merotelic kinetochore attachment: causes and effects
    DOI 10.1016/j.tcb.2011.01.003
    Type Journal Article
    Author Gregan J
    Journal Trends in Cell Biology
    Pages 374-381
    Link Publication
  • 2011
    Title CSA and CSB proteins interact with p53 and regulate its Mdm2-dependent ubiquitination
    DOI 10.4161/cc.10.21.17905
    Type Journal Article
    Author Latini P
    Journal Cell Cycle
    Pages 3719-3730
    Link Publication
  • 2011
    Title RAD21L is a novel kleisin subunit of the cohesin complex
    DOI 10.4161/cc.10.12.15691
    Type Journal Article
    Author Polakova S
    Journal Cell Cycle
    Pages 1893-1893
    Link Publication
  • 2008
    Title Sister chromatids caught in the cohesin trap
    DOI 10.1038/nsmb0908-899
    Type Journal Article
    Author Cipak L
    Journal Nature Structural & Molecular Biology
    Pages 899-900
    Link Publication
  • 2010
    Title Casein kinase 1 is required for efficient removal of Rec8 during meiosis I
    DOI 10.4161/cc.9.13.12146
    Type Journal Article
    Author Rumpf C
    Journal Cell Cycle
    Pages 2657-2662
    Link Publication
  • 2010
    Title Chemogenomic and transcriptome analysis identifies mode of action of the chemosensitizing agent CTBT (7-chlorotetrazolo[5,1-c]benzo[1,2,4]triazine)
    DOI 10.1186/1471-2164-11-153
    Type Journal Article
    Author Batova M
    Journal BMC Genomics
    Pages 153
    Link Publication

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