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Elucidating the Self-assembly of Lactobacilli surface-Layer Proteins

Elucidating the Self-assembly of Lactobacilli surface-Layer Proteins

Tea Pavkov-Keller (ORCID: 0000-0001-7871-6680)
  • Grant DOI 10.55776/P29432
  • Funding program Principal Investigator Projects
  • Status ended
  • Start January 1, 2017
  • End July 31, 2021
  • Funding amount € 341,438

Disciplines

Biology (100%)

Keywords

    S-layers, Lactobacillus, 3D-structure, Self-assembly, Teichoic acids, Structural biology

Abstract

Surface layers (S-layers) are protein coats displayed on the external surface of many bacterial and archaeal species. They are unique between different species. In pathogenic bacteria, S- layers contribute to virulence as they provide a large surface area for interaction with host cells which implies tremendous implications for the immune response and human disease. Nevertheless, the underlying mechanisms of S-layers are poorly understood, primarily due to lack of structural knowledge. The tendency of wild-type S-layer proteins to form two- dimensional-crystalline lattices makes it very difficult to produce three-dimensional-crystals, which are the prerequisite for crystallographic structure determination. In this project, we focus on the structural and functional characterization of S-layer proteins and their domains from lactobacilli. Lactobacilli belong to the generally recognized as safe (GRAS) microorganism and represent health-promoting factors to their host. As the outermost layer in different species of lactobacilli, the S-layers are in direct contact with the bacterial environment and thus involved in many of their surface properties, e.g. adhesion to epithelial cells and to intestinal components. Therefore, the structural investigation of surface properties of lactobacilli possessing S-layers will provide the basis for understanding both, the mechanism involved in adhesion properties and the biological functions of the S-layer. Novel in our current approach is the structure determination of distinct domains of the S-layer protein in combination with different complimentary methods, such as nuclear magnetic resonance spectroscopy, mass spectrometry, electron microscopy and biochemical methods. Consequently, the outcome of these studies will have a prominent impact on our ability to exploit S-layer proteins, including the development of novel components for vaccines against infectious diseases.

Research institution(s)
  • Universität Graz - 100%
International project participants
  • Airi Palva, Helsinki University - Finland
  • Janet Vonck, Max-Planck-Institut für Biophysik - Germany

Research Output

  • 4371 Citations
  • 18 Publications
  • 5 Policies
  • 1 Methods & Materials
  • 10 Datasets & models
  • 20 Disseminations
  • 7 Scientific Awards
  • 14 Fundings
Publications
  • 2018
    Title Structure and Catalytic Mechanism of a Bacterial Friedel–Crafts Acylase
    DOI 10.1002/cbic.201800462
    Type Journal Article
    Author Pavkov-Keller T
    Journal ChemBioChem
    Pages 88-95
    Link Publication
  • 2018
    Title The crystal structure of monoacylglycerol lipase from M. tuberculosis reveals the basis for specific inhibition
    DOI 10.1038/s41598-018-27051-7
    Type Journal Article
    Author Aschauer P
    Journal Scientific Reports
    Pages 8948
    Link Publication
  • 2025
    Title Structural basis of phosphorylation-independent nuclear import of CIRBP by TNPO3
    DOI 10.1038/s41467-025-59802-2
    Type Journal Article
    Author Zhou Q
    Journal Nature Communications
    Pages 4456
    Link Publication
  • 2022
    Title Accurate prediction of protein structures and interactions using a three-track neural network
    DOI 10.1530/ey.19.15.15
    Type Journal Article
    Author M B
    Journal Yearbook of Paediatric Endocrinology
    Link Publication
  • 2021
    Title Accurate prediction of protein structures and interactions using a 3-track network
    DOI 10.1101/2021.06.14.448402
    Type Preprint
    Author Baek M
    Pages 2021.06.14.448402
    Link Publication
  • 2019
    Title Abstracts LB PDS
    DOI 10.1111/all.13960
    Type Journal Article
    Journal Allergy
    Pages 333-376
    Link Publication
  • 2019
    Title Structure and Catalytic Mechanism of a Bacterial Friedel-Crafts Acylase
    DOI 10.3204/pubdb-2024-00974
    Type Other
    Author Pavkov-Keller T
    Link Publication
  • 2021
    Title Surface layer proteins of Lactobacillus acidophilus – a story of SlpA and SlpX
    DOI 10.1107/s0108767321088449
    Type Journal Article
    Author Sagmeister T
    Journal Acta Crystallographica Section A Foundations and Advances
    Link Publication
  • 2024
    Title The molecular architecture of Lactobacillus S-layer: Assembly and attachment to teichoic acids
    DOI 10.1073/pnas.2401686121
    Type Journal Article
    Author Sagmeister T
    Journal Proceedings of the National Academy of Sciences
    Link Publication
  • 2019
    Title Master Thesis - Characterization of altiarchaeal grappling hooks Hami from Candidatus Altiarchaeum hamiconexum and self-assembly-domain of SlpA Surface-Layer protein from Lactobacillus acidophilus
    Type Other
    Author Theo Sagmeister
    Link Publication
  • 2019
    Title Master Thesis - Structural and biophysical Characterization of SlpX of Lactobacillus acidophilus
    Type Other
    Author Elisabeth Damisch
    Link Publication
  • 2022
    Title The interaction of the Lactobacilli surface layer proteins with the lipotheichoic acids from the cell wall
    DOI 10.1107/s2053273322096085
    Type Journal Article
    Author Gubensäk N
    Journal Acta Crystallographica Section A Foundations and Advances
  • 2024
    Title The molecular architecture of Lactobacillus S-Layer: Assembly and attachment to teichoic acids
    DOI 10.21203/rs.3.rs-3689109/v1
    Type Preprint
    Author Sagmeister T
    Link Publication
  • 2021
    Title Accurate prediction of protein structures and interactions using a three-track neural network
    DOI 10.1126/science.abj8754
    Type Journal Article
    Author Baek M
    Journal Science
    Pages 871-876
    Link Publication
  • 2021
    Title Structural Changes in the Cap of Rv0183/mtbMGL Modulate the Shape of the Binding Pocket
    DOI 10.3390/biom11091299
    Type Journal Article
    Author Grininger C
    Journal Biomolecules
    Pages 1299
    Link Publication
  • 2022
    Title Solution of the protein structure prediction problem at last: crucial innovations and next frontiers.
    DOI 10.12703/r-01-0000020
    Type Journal Article
    Author Agard D
    Journal Faculty reviews
    Pages 38
    Link Publication
  • 2021
    Title Master Thesis - Binding of LTA to the bacterial S-layer proteins
    Type Other
    Author Azmoudeh Pupak
    Link Publication
  • 2021
    Title Biophysical and structural insights into cell wall associated proteins and allergens
    Type Other
    Author Markus Eder
    Link Publication
Policies
  • 2021 Link
    Title RosettaFold publication
    DOI 10.1126/science.abj8754
    Type Contribution to new or Improved professional practice
    Link Link
  • 2020
    Title Interaction studies by ITC
    Type Influenced training of practitioners or researchers
  • 2020 Link
    Title Advisory board of the Core Facility "Ultrastructure Analysis"
    Type Participation in a guidance/advisory committee
    Link Link
  • 2018
    Title ARCIMBOLDO Workshop
    Type Influenced training of practitioners or researchers
  • 2017
    Title NESY Winterschool
    Type Influenced training of practitioners or researchers
Methods & Materials
  • 0
    Title Upgrade of transmission electron microscope for cryoEM measurements
    Type Improvements to research infrastructure
Datasets & models
  • 2021 Link
    Title Crystal structure of SlpX_ac, domain II, heavy atom derivative, different sub-domain conformations (PDB: 7QFK)
    DOI 10.2210/pdb7QFK/pdb
    Type Database/Collection of data
    Public Access
    Link Link
  • 2021 Link
    Title Crystal structure of SlpX_ac, domain I (PDB: 7QFI)
    DOI 10.2210/pdb7QFI/pdb
    Type Database/Collection of data
    Public Access
    Link Link
  • 2021 Link
    Title Crystal structure of SlpX_ac, domain II (PDB: 7QFJ)
    DOI 10.2210/pdb7QFJ/pdb
    Type Database/Collection of data
    Public Access
    Link Link
  • 2021 Link
    Title Crystal structure of SlpA_amy domain I (PDB: 7QLH)
    DOI 10.2210/pdb7QLH/pdb
    Type Database/Collection of data
    Public Access
    Link Link
  • 2021 Link
    Title Crystal structure of SlpA_ac domain III (PDB: 7QFG)
    DOI 10.2210/pdb7QFG/pdb
    Type Database/Collection of data
    Public Access
    Link Link
  • 2021 Link
    Title Crystal structure of Adenylosuccinate Synthetase from H. pylori in complex with HDA, GDP, IMO, Mg (PDB: 6ZXQ)
    Type Database/Collection of data
    Public Access
    Link Link
  • 2021 Link
    Title Crystal structure of mtbMGL K74A (Closed Cap Conformation) (PDB: 7OZM)
    DOI 10.2210/pdb7ozm/pdb
    Type Database/Collection of data
    Public Access
    Link Link
  • 2021 Link
    Title Crystal structure of mtbMGL K74A (Substrate Analog Complex) (PDB: 7P0Y)
    DOI 10.2210/pdb7p0y/pdb
    Type Database/Collection of data
    Public Access
    Link Link
  • 2021 Link
    Title Crystal structure of SlpA_ac domain II (PDB: 7QFL)
    DOI 10.2210/pdb7QFL/pdb
    Type Database/Collection of data
    Public Access
    Link Link
  • 2017 Link
    Title Crystal structure of surface layer protein SbsC, calcium binindg domains 6-7 (PDB: 5FTY)
    DOI 10.2210/pdb5fty/pdb
    Type Database/Collection of data
    Public Access
    Link Link
Disseminations
  • 2021
    Title Press release - der Standard
    Type A press release, press conference or response to a media enquiry/interview
  • 2020
    Title Talk LST, Markus Eder
    Type A talk or presentation
  • 2018
    Title Talk ÖGMBT 2018, Markus Eder
    Type A talk or presentation
  • 2018
    Title "Open house day" 2018, at the University of Graz
    Type Participation in an open day or visit at my research institution
  • 2020
    Title Cryo-EM in the 21st century
    Type A talk or presentation
  • 2021
    Title Press release studium.at
    Type A press release, press conference or response to a media enquiry/interview
  • 2017
    Title Talk IUPAB and EBSA congress, Tea Pavkov-Keller
    Type A talk or presentation
  • 2018
    Title Talk Elli, Elisabeth Damisch
    Type A talk or presentation
  • 2021
    Title Press release - Die Presse
    Type A press release, press conference or response to a media enquiry/interview
  • 2018
    Title Talk ECM31, Tea Pavkov-Keller
    Type A talk or presentation
  • 2018
    Title Talk BioNanoMed 2018, Tea Pavkov-Keller
    Type A talk or presentation
  • 2021
    Title Press release Uni-Graz
    Type A press release, press conference or response to a media enquiry/interview
  • 2017
    Title Talk ESIB 2017, Tea Pavkov-Keller
    Type A talk or presentation
  • 2021
    Title Press release APA
    Type A press release, press conference or response to a media enquiry/interview
  • 2021
    Title Organization of "Frontiers in Integrative Structural Biology" event
    Type Participation in an activity, workshop or similar
  • 2021
    Title Talk EJTEMM 2021, Nina Gubensäk
    Type A talk or presentation
  • 2018
    Title Talk ME, Markus Eder
    Type A talk or presentation
  • 2021
    Title "Open house day" 2021, at the University of Graz
    Type Participation in an open day or visit at my research institution
  • 2021
    Title Press release 5min.at
    Type A press release, press conference or response to a media enquiry/interview
  • 2021
    Title Press release kurier.at
    Type A press release, press conference or response to a media enquiry/interview
Scientific Awards
  • 2021
    Title Poster prize for Theo Sagmeister, Frontiers in Structural Biology
    Type Poster/abstract prize
    Level of Recognition National (any country)
  • 2021
    Title EMBO short term fellowship for Christoph Grininger
    Type Awarded honorary membership, or a fellowship, of a learned society
    Level of Recognition Continental/International
  • 2019
    Title Poster prize for Markus Eder, EACCI Congress
    Type Poster/abstract prize
    Level of Recognition Continental/International
  • 2019
    Title Poster prize for Theo Sagmeister, doc.days
    Type Poster/abstract prize
    Level of Recognition Regional (any country)
  • 2019
    Title Visit Igor Bubic
    Type Attracted visiting staff or user to your research group
    Level of Recognition Continental/International
  • 2018
    Title Keynote speaker at EMBO Workshop
    Type Personally asked as a key note speaker to a conference
    Level of Recognition Continental/International
  • 2018
    Title Poster prize for Markus Eder, TE Symposium
    Type Poster/abstract prize
    Level of Recognition Continental/International
Fundings
  • 2020
    Title Infrastructure - SpectroLight 610, Xtal Concepts
    Type Capital/infrastructure (including equipment)
    Start of Funding 2020
    Funder Field of Excellence BioHealth, Graz
  • 2017
    Title cryoEM - TEM upgrade, cryo stage and detector for Zeiss Libra 120KV + Leica GP2 vitrification robot
    Type Capital/infrastructure (including equipment)
    Start of Funding 2017
    Funder Nawi Graz, University of Graz
  • 2019
    Title GoStyria mobility grant for I. Bubic (Institute of Rudjer Boskovic, Zagreb, Croatia)
    Type Fellowship
    Start of Funding 2019
    Funder University of Graz
  • 2021
    Title The sensory regulation of virulence in Vibrio cholerae
    Type Other
    Start of Funding 2021
    Funder Austrian Science Fund (FWF)
  • 2021
    Title DOC130 - BioMolStruct
    Type Research grant (including intramural programme)
    Start of Funding 2021
    Funder Austrian Science Fund (FWF)
  • 2020
    Title FFG COMET / Innophore, ACIB - Novel industrial enzymes
    Type Research grant (including intramural programme)
    Start of Funding 2020
    Funder Austrian Research Promotion Agency
  • 2017
    Title Travel grant - Integrative structural biology, International school of crystallography, Erice, Italy for Markus Eder
    Type Travel/small personal
    Start of Funding 2017
    Funder Ettore Majorana Foundation and Centre for Scientific Culture
  • 2018
    Title Travel grant - EMBO Practical Course "Characterisation of macromolecular complexes by integrative structural biology" for Markus Eder
    Type Travel/small personal
    Start of Funding 2018
    Funder European Molecular Biology Organisation
  • 2017
    Title Travel grant - Structural Mass Spectrometry Workshop, Weizmann Institute, Istrael for Markus Eder
    Type Travel/small personal
    Start of Funding 2017
    Funder Federation of European Biochemical Societies (FEBS)
  • 2018
    Title Travel grant - 31st European crystallographic Meeting, Oviedo, Spain for Elisabeth Damisch
    Type Travel/small personal
    Start of Funding 2018
    Funder International Union of Crystallography (IUCr)
  • 2017
    Title Travel grant - 11th European Biophysical Societies' Association (EBSA) Congress in Edinburgh, Scotland for Tea Pavkov-Keller
    Type Travel/small personal
    Start of Funding 2017
  • 2019
    Title Travel grant - ProLin "Protein-Lipid Nanostructures: From Domains to Devices", Bilbao, Spain for Djenana Vejzovic
    Type Travel/small personal
    Start of Funding 2019
  • 2019
    Title Travel grant - ProLin "Protein-Lipid Nanostructures: From Domains to Devices", Bilbao, Spain for Theo Sagmeister
    Type Travel/small personal
    Start of Funding 2019
  • 2020
    Title Travel grant - CCP4 Study Weekend 2020, Nottingham, UK for Theo Sagmeister
    Type Travel/small personal
    Start of Funding 2020
    Funder Science and Technologies Facilities Council (STFC)

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