Postmortem Validation of Quantitative Susceptibility Mapping
Postmortem Validation of Quantitative Susceptibility Mapping
Disciplines
Clinical Medicine (65%); Medical Engineering (35%)
Keywords
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Postmortem MRI,
Magnetic Susceptibility,
QSM,
Iron,
Multiple Sclerosis,
Myelin
Quantitative susceptibility mapping (QSM) is a novel method for the non-invasive assessment of a basic physical property by magnetic resonance imaging (MRI) in vivo. Iron accounts for a substantial share of the magnetic susceptibility observed in the human brain tissue and increased iron accumulation is linked to neurodegenerative processes. While iron is paramagnetic, neuronal fibers are diamagnetic and it remains still unclear how their myelin content, ratio of lipids to proteins, diameter of myelinated nerve axons, fiber bundle geometry as well as other non-myelin related factors attribute to the magnetic susceptibility. We hypothesize that by modeling magnetic susceptibility, the determinants underlying QSM can be disentangled, which is currently not possible using in vivo MRI. Ten postmortem brains from control subjects and 10 brains from patients with multiple sclerosis (MS) will undergo extensive MRI. Complementary to MRI, tissue specimens will be analyzed by mass spectrometry, magnetometry, histologic staining, as well as transmission electron microscopy. The magnetic susceptibility observed by MRI will be explained by the aforementioned contributors. This project will quantify several biophysical mechanisms of magnetic susceptibility, and ultimately allow non-invasive QSM in patients with neurological diseases in vivo.
Research Output
- 842 Citations
- 31 Publications
- 2 Datasets & models
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2020
Title QSM Reconstruction Challenge 2.0: Design and Report of Results DOI 10.1101/2020.11.25.397695 Type Preprint Author Bilgic B Pages 2020.11.25.397695 Link Publication -
2017
Title Effects of concentration and vendor specific composition of formalin on postmortem MRI of the human brain DOI 10.1002/mrm.26699 Type Journal Article Author Birkl C Journal Magnetic Resonance in Medicine Pages 1111-1115 Link Publication -
2017
Title Assessment of ferritin content in multiple sclerosis brains using temperature-induced R*2 changes DOI 10.1002/mrm.26780 Type Journal Article Author Birkl C Journal Magnetic Resonance in Medicine Pages 1609-1615 Link Publication -
2022
Title Strategic white matter hyperintensity locations for cognitive impairment: A multicenter lesion-symptom mapping study in 3525 memory clinic patients DOI 10.1002/alz.12827 Type Journal Article Author Coenen M Journal Alzheimer's & Dementia Pages 2420-2432 Link Publication -
2020
Title Adaptive slice-specific z-shimming for 2D spoiled gradient-echo sequences DOI 10.1002/mrm.28468 Type Journal Article Author Soellradl M Journal Magnetic Resonance in Medicine Pages 818-830 Link Publication -
2019
Title DeepQSM - using deep learning to solve the dipole inversion for quantitative susceptibility mapping DOI 10.1016/j.neuroimage.2019.03.060 Type Journal Article Author Bollmann S Journal NeuroImage Pages 373-383 Link Publication -
2019
Title Quantitative Susceptibility Mapping to Assess Cerebral Vascular Compliance DOI 10.3174/ajnr.a5933 Type Journal Article Author Birkl C Journal American Journal of Neuroradiology Pages 460-463 Link Publication -
2024
Title Neuroimaging of Parkinson's disease by quantitative susceptibility mapping DOI 10.1016/j.neuroimage.2024.120547 Type Journal Article Author Guan X Journal NeuroImage Pages 120547 Link Publication -
2024
Title Biophysical contrast sources for magnetic susceptibility and R2* mapping: A combined 7 Tesla, mass spectrometry and electron paramagnetic resonance study DOI 10.1016/j.neuroimage.2024.120892 Type Journal Article Author Otsuka F Journal NeuroImage Pages 120892 Link Publication -
2024
Title Explainable Concept Mappings of MRI: Revealing the Mechanisms Underlying Deep Learning-Based Brain Disease Classification DOI 10.1007/978-3-031-63797-1_11 Type Book Chapter Author Tinauer C Publisher Springer Nature Pages 202-216 -
2024
Title Cerebral white matter hyperintensity volumes: Normative age- and sex-specific values from 15 population-based cohorts comprising 14,876 individuals DOI 10.1016/j.neurobiolaging.2024.11.006 Type Journal Article Author De Kort F Journal Neurobiology of Aging Pages 38-47 Link Publication -
2021
Title Streaking artifact suppression of quantitative susceptibility mapping reconstructions via L1-norm data fidelity optimization (L1-QSM) DOI 10.1002/mrm.28957 Type Journal Article Author Milovic C Journal Magnetic Resonance in Medicine Pages 457-473 Link Publication -
2021
Title Interpretable Brain Disease Classification and Relevance-Guided Deep Learning DOI 10.1101/2021.09.09.21263013 Type Preprint Author Tinauer C Pages 2021.09.09.21263013 Link Publication -
2022
Title Hybrid data fidelity term approach for quantitative susceptibility mapping DOI 10.1002/mrm.29218 Type Journal Article Author Lambert M Journal Magnetic Resonance in Medicine Pages 962-972 Link Publication -
2018
Title DeepQSM - Using Deep Learning to Solve the Dipole Inversion for MRI Susceptibility Mapping DOI 10.1101/278036 Type Preprint Author Rasmussen K Pages 278036 Link Publication -
2018
Title Weak-harmonic regularization for quantitative susceptibility mapping DOI 10.1002/mrm.27483 Type Journal Article Author Milovic C Journal Magnetic Resonance in Medicine Pages 1399-1411 Link Publication -
2022
Title Interpretable brain disease classification and relevance-guided deep learning DOI 10.1038/s41598-022-24541-7 Type Journal Article Author Tinauer C Journal Scientific Reports Pages 20254 Link Publication -
2021
Title QSM reconstruction challenge 2.0: Design and report of results DOI 10.1002/mrm.28754 Type Journal Article Author Committee Q Journal Magnetic Resonance in Medicine Pages 1241-1255 Link Publication -
2024
Title Amyloid pathology and vascular risk are associated with distinct patterns of cerebral white matter hyperintensities: A multicenter study in 3132 memory clinic patients DOI 10.1002/alz.13765 Type Journal Article Author Biesbroek J Journal Alzheimer's & Dementia Pages 2980-2989 Link Publication -
2024
Title Recommended implementation of quantitative susceptibility mapping for clinical research in the brain: A consensus of the ISMRM electro-magnetic tissue properties study group DOI 10.1002/mrm.30006 Type Journal Article Author Committee Q Journal Magnetic Resonance in Medicine Pages 1834-1862 Link Publication -
2023
Title Multimodal analytical tools for the molecular and elemental characterisation of lesions in brain tissue of multiple sclerosis patients DOI 10.1016/j.talanta.2023.125518 Type Journal Article Author Niehaus P Journal Talanta Pages 125518 Link Publication -
2023
Title Spatial distributions of white matter hyperintensities on brain MRI: A pooled analysis of individual participant data from 11 memory clinic cohorts DOI 10.1016/j.nicl.2023.103547 Type Journal Article Author Coenen M Journal NeuroImage: Clinical Pages 103547 Link Publication -
2022
Title Heritability of R2* iron in the basal ganglia and cortex DOI 10.18632/aging.204212 Type Journal Article Author Hofer E Journal Aging (Albany NY) Pages 6415-6426 Link Publication -
2020
Title Cross-sectional and Longitudinal Assessment of Brain Iron Level in Alzheimer Disease Using 3-T MRI DOI 10.1148/radiol.2020192541 Type Journal Article Author Damulina A Journal Radiology Pages 192541 -
2020
Title The 2016 QSM Challenge: Lessons learned and considerations for a future challenge design DOI 10.1002/mrm.28185 Type Journal Article Author Milovic C Journal Magnetic Resonance in Medicine Pages 1624-1637 Link Publication -
2019
Title SHARQnet - Sophisticated Harmonic Artifact Reduction in Quantitative Susceptibility Mapping using a Deep Convolutional Neural Network DOI 10.1101/522151 Type Preprint Author Bollmann S Pages 522151 Link Publication -
2019
Title White Matter Hyperintensities in Alzheimer’s Disease: A Lesion Probability Mapping Study DOI 10.3233/jad-180982 Type Journal Article Author Damulina A Journal Journal of Alzheimer's Disease Pages 789-796 -
2019
Title SHARQnet – Sophisticated harmonic artifact reduction in quantitative susceptibility mapping using a deep convolutional neural network DOI 10.1016/j.zemedi.2019.01.001 Type Journal Article Author Bollmann S Journal Zeitschrift für Medizinische Physik Pages 139-149 Link Publication -
2019
Title Assessment and correction of macroscopic field variations in 2D spoiled gradient-echo sequences DOI 10.1002/mrm.28139 Type Journal Article Author Soellradl M Journal Magnetic Resonance in Medicine Pages 620-633 Link Publication -
2018
Title Nigral iron deposition in common tremor disorders DOI 10.1002/mds.27549 Type Journal Article Author Homayoon N Journal Movement Disorders Pages 129-132 Link Publication -
2017
Title Quantitative susceptibility mapping: Report from the 2016 reconstruction challenge DOI 10.1002/mrm.26830 Type Journal Article Author Langkammer C Journal Magnetic Resonance in Medicine Pages 1661-1673 Link Publication
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2020
Link
Title Example data set for 2D adaptive slice-specific z-shimming DOI 10.5281/zenodo.4044428 Type Database/Collection of data Public Access Link Link -
2020
Link
Title Example data set for 2D adaptive slice-specific z-shimming DOI 10.5281/zenodo.4044429 Type Database/Collection of data Public Access Link Link