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Crosstalk between cellular metabolism and DNA repair

Crosstalk between cellular metabolism and DNA repair

Joanna Loizou (ORCID: 0000-0003-1853-0424)
  • Grant DOI 10.55776/P33024
  • Funding program Principal Investigator Projects
  • Status ended
  • Start December 1, 2019
  • End July 31, 2022
  • Funding amount € 399,693
  • Project website

Disciplines

Biology (100%)

Keywords

    Metabolism, DNA repair, Genome integrity, DNA damage

Abstract Final report

The maintenance of genetic information is required to suppress diseases, including cancer and rare diseases. To do so cells have a complex signaling network that detects DNA damage and subsequently repairs it. This network relies on the cells chemical state, or metabolism, and hence alterations in cellular metabolism can impact DNA damage and repair. However, while there are a few examples highlighting the interplay between metabolism and DNA repair, this has not be studied systematically. We propose that current technologies including gene editing (using CRISPR-Cas9) and chemical biology (with the development of inhibitor compounds) now allow for such systematic investigations. Hence, using these technologies along with markers for DNA damage, we propose to research how metabolic processes affect DNA damage and repair. Having identified novel interactions we will next study how they function at the molecular level. This study will lead to an understanding of how the cells chemical state affects the fundamental cellular process of DNA repair that is ultimately necessary to safeguard genomic information. Therefore, we will gain insight into diseases associated with DNA repair deficiencies that could lead to better treatments.

Maintaining human genomes is required to suppress diseases, including cancer and rare diseases. To do so cells have a complex signaling network that detects any damage that might occur to DNA, that makes up our genomes. This network can repair this damage and relies on the cells' chemical state, or metabolism, and hence alterations in cellular metabolism can impact DNA damage and repair. While there are a few examples highlighting how metabolism can affect DNA repair, this has not be studied systematically. We propose that current technologies including gene editing (using CRISPR-Cas9) and chemical biology (with the development of inhibitor compounds) now allow for such systematic investigations. Hence, using these technologies along with markers for DNA damage, we have researched how metabolic processes affect DNA damage and repair. Having identified novel interactions we have studied how they function at the molecular level. Our findings have increased our understanding of how the cells chemical state affects the fundamental cellular process of DNA repair that is ultimately necessary to safeguard genomic information. This means we have better understood how diseases associated with DNA repair deficiencies occur and so ultimately these findings could lead to better treatments for diseases associated with genome instability.

Research institution(s)
  • Medizinische Universität Wien - 100%
Project participants
  • Giulio Gino Maria Superti-Furga, CeMM – Forschungszentrum für Molekulare Medizin GmbH , national collaboration partner
  • Stefan Kubicek, CeMM – Forschungszentrum für Molekulare Medizin GmbH , national collaboration partner
  • Jörg Menche, Universität Wien , national collaboration partner
International project participants
  • Trey G. Ideker, University of California San Diego - USA
  • Stephen P. Jackson, University of Cambridge

Research Output

  • 214 Citations
  • 10 Publications
  • 3 Datasets & models
  • 1 Scientific Awards
Publications
  • 2021
    Title Prime Editing Efficiency and Fidelity are Enhanced in the Absence of Mismatch Repair
    DOI 10.1101/2021.09.30.462548
    Type Preprint
    Author Da Silva J
    Pages 2021.09.30.462548
    Link Publication
  • 2021
    Title Tissue Specific DNA Repair Outcomes Shape the Landscape of Genome Editing
    DOI 10.3389/fgene.2021.728520
    Type Journal Article
    Author Meyenberg M
    Journal Frontiers in Genetics
    Pages 728520
    Link Publication
  • 2022
    Title Prime editing efficiency and fidelity are enhanced in the absence of mismatch repair
    DOI 10.1038/s41467-022-28442-1
    Type Journal Article
    Author Ferreira Da Silva J
    Journal Nature Communications
    Pages 760
    Link Publication
  • 2021
    Title Interplay between cellular metabolism and the DNA damage response
    DOI 10.3390/iecc2021-09223
    Type Conference Proceeding Abstract
    Author Loizou J
    Pages 9223
    Link Publication
  • 2022
    Title Prime editing efficiency and fidelity are enhanced in the absence of mismatch repair
    DOI 10.3929/ethz-b-000533332
    Type Other
    Author Ferreira Da Silva
    Link Publication
  • 2023
    Title Detection of oxaliplatin- and cisplatin-DNA lesions requires different global genome repair mechanisms that affect their clinical efficacy.
    DOI 10.1093/narcan/zcad057
    Type Journal Article
    Author Muniesa-Vargas A
    Journal NAR cancer
  • 2023
    Title A metabolic map of the DNA damage response identifies PRDX1 in the control of nuclear ROS scavenging and aspartate availability.
    DOI 10.15252/msb.202211267
    Type Journal Article
    Author Kourtis S
    Journal Molecular systems biology
  • 2022
    Title Clickable Cisplatin Derivatives as Versatile Tools to Probe the DNA Damage Response to Chemotherapy
    DOI 10.3389/fonc.2022.874201
    Type Journal Article
    Author Moretton A
    Journal Frontiers in Oncology
    Pages 874201
    Link Publication
  • 2022
    Title A metabolic map of the DNA damage response identifies PRDX1 in nuclear ROS scavenging and aspartate synthesis
    DOI 10.1101/2022.08.01.500855
    Type Preprint
    Author Moretton A
    Pages 2022.08.01.500855
    Link Publication
  • 2020
    Title Interplay between Cellular Metabolism and the DNA Damage Response in Cancer
    DOI 10.3390/cancers12082051
    Type Journal Article
    Author Moretton A
    Journal Cancers
    Pages 2051
    Link Publication
Datasets & models
  • 2022 Link
    Title Metabolomics data
    Type Database/Collection of data
    Public Access
    Link Link
  • 2022 Link
    Title CRISPR screen next generation sequencing data
    Type Database/Collection of data
    Public Access
    Link Link
  • 2022 Link
    Title Chromatome-MS data
    Type Database/Collection of data
    Public Access
    Link Link
Scientific Awards
  • 2021
    Title Wilhelm Ritter von Mannagetta Prize for Medicine
    Type Research prize
    Level of Recognition National (any country)

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