Crosstalk between cellular metabolism and DNA repair
Crosstalk between cellular metabolism and DNA repair
Disciplines
Biology (100%)
Keywords
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Metabolism,
DNA repair,
Genome integrity,
DNA damage
The maintenance of genetic information is required to suppress diseases, including cancer and rare diseases. To do so cells have a complex signaling network that detects DNA damage and subsequently repairs it. This network relies on the cells chemical state, or metabolism, and hence alterations in cellular metabolism can impact DNA damage and repair. However, while there are a few examples highlighting the interplay between metabolism and DNA repair, this has not be studied systematically. We propose that current technologies including gene editing (using CRISPR-Cas9) and chemical biology (with the development of inhibitor compounds) now allow for such systematic investigations. Hence, using these technologies along with markers for DNA damage, we propose to research how metabolic processes affect DNA damage and repair. Having identified novel interactions we will next study how they function at the molecular level. This study will lead to an understanding of how the cells chemical state affects the fundamental cellular process of DNA repair that is ultimately necessary to safeguard genomic information. Therefore, we will gain insight into diseases associated with DNA repair deficiencies that could lead to better treatments.
Maintaining human genomes is required to suppress diseases, including cancer and rare diseases. To do so cells have a complex signaling network that detects any damage that might occur to DNA, that makes up our genomes. This network can repair this damage and relies on the cells' chemical state, or metabolism, and hence alterations in cellular metabolism can impact DNA damage and repair. While there are a few examples highlighting how metabolism can affect DNA repair, this has not be studied systematically. We propose that current technologies including gene editing (using CRISPR-Cas9) and chemical biology (with the development of inhibitor compounds) now allow for such systematic investigations. Hence, using these technologies along with markers for DNA damage, we have researched how metabolic processes affect DNA damage and repair. Having identified novel interactions we have studied how they function at the molecular level. Our findings have increased our understanding of how the cells chemical state affects the fundamental cellular process of DNA repair that is ultimately necessary to safeguard genomic information. This means we have better understood how diseases associated with DNA repair deficiencies occur and so ultimately these findings could lead to better treatments for diseases associated with genome instability.
- Giulio Gino Maria Superti-Furga, CeMM – Forschungszentrum für Molekulare Medizin GmbH , national collaboration partner
- Stefan Kubicek, CeMM – Forschungszentrum für Molekulare Medizin GmbH , national collaboration partner
- Jörg Menche, Universität Wien , national collaboration partner
Research Output
- 214 Citations
- 10 Publications
- 3 Datasets & models
- 1 Scientific Awards
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2021
Title Prime Editing Efficiency and Fidelity are Enhanced in the Absence of Mismatch Repair DOI 10.1101/2021.09.30.462548 Type Preprint Author Da Silva J Pages 2021.09.30.462548 Link Publication -
2021
Title Tissue Specific DNA Repair Outcomes Shape the Landscape of Genome Editing DOI 10.3389/fgene.2021.728520 Type Journal Article Author Meyenberg M Journal Frontiers in Genetics Pages 728520 Link Publication -
2022
Title Prime editing efficiency and fidelity are enhanced in the absence of mismatch repair DOI 10.1038/s41467-022-28442-1 Type Journal Article Author Ferreira Da Silva J Journal Nature Communications Pages 760 Link Publication -
2021
Title Interplay between cellular metabolism and the DNA damage response DOI 10.3390/iecc2021-09223 Type Conference Proceeding Abstract Author Loizou J Pages 9223 Link Publication -
2022
Title Prime editing efficiency and fidelity are enhanced in the absence of mismatch repair DOI 10.3929/ethz-b-000533332 Type Other Author Ferreira Da Silva Link Publication -
2023
Title Detection of oxaliplatin- and cisplatin-DNA lesions requires different global genome repair mechanisms that affect their clinical efficacy. DOI 10.1093/narcan/zcad057 Type Journal Article Author Muniesa-Vargas A Journal NAR cancer -
2023
Title A metabolic map of the DNA damage response identifies PRDX1 in the control of nuclear ROS scavenging and aspartate availability. DOI 10.15252/msb.202211267 Type Journal Article Author Kourtis S Journal Molecular systems biology -
2022
Title Clickable Cisplatin Derivatives as Versatile Tools to Probe the DNA Damage Response to Chemotherapy DOI 10.3389/fonc.2022.874201 Type Journal Article Author Moretton A Journal Frontiers in Oncology Pages 874201 Link Publication -
2022
Title A metabolic map of the DNA damage response identifies PRDX1 in nuclear ROS scavenging and aspartate synthesis DOI 10.1101/2022.08.01.500855 Type Preprint Author Moretton A Pages 2022.08.01.500855 Link Publication -
2020
Title Interplay between Cellular Metabolism and the DNA Damage Response in Cancer DOI 10.3390/cancers12082051 Type Journal Article Author Moretton A Journal Cancers Pages 2051 Link Publication
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2022
Link
Title Metabolomics data Type Database/Collection of data Public Access Link Link -
2022
Link
Title CRISPR screen next generation sequencing data Type Database/Collection of data Public Access Link Link -
2022
Link
Title Chromatome-MS data Type Database/Collection of data Public Access Link Link
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2021
Title Wilhelm Ritter von Mannagetta Prize for Medicine Type Research prize Level of Recognition National (any country)