Phylogenetics & Biogeography of Nicotiana sect.Suaveolentes
Phylogenetics & Biogeography of Nicotiana sect.Suaveolentes
Disciplines
Biology (100%)
Keywords
-
Nicotiana,
Phylogenetics,
Evolution,
Biogeography,
RADseq.,
Suaveolentes
The genus Nicotiana belongs to the plant family Solanaceae that has a great economic importance. This family includes several major crop species (e.g. potato Solanum tuberosum, tomato S.lycopersicum, eggplant - S. melongena, chilli peppers Capsicum spp., Tobacco - Nicotiana spp), as well as ornamentals (e.g. Petunia spp.). In this proposal we are investigating the section Suaveolentes of genus Nicotiana, which is largely endemic to Australia. Section Suaveolentes appears to be the result of natural ancient allopolyploidisation, i.e. hybridisation between individuals belonging to two, not closely related species accompanied by whole genome doubling. As new species of Nicotiana sect. Suaveolentes evolved and chromosome numbers decreased, they occupied dry interior of central and southern Australia, where they are now most diverse. However presently, two radically different explanations exist for the current distribution of N. sect. Suaveolentes in Australia. Previously, the researchers in Australia believed that the ancestor of Nicotiana sect. Suaveolentes is approximately 20 million years old and, like nearly all other Australian plant groups, formerly widespread across the continent, long before aridification commenced seven million years ago. Thus, it was accepted that the current distributions of the modern set of species are due to vicariance over 20 million years.In contrast to this, recent work done using molecular clock methods and a small number of species in section Suaveolentes and found that the age of the section is only six million years. Dispersal into the Eremaean Zone only commenced as recently as two million years. To test these two different opinions on the distribution of this section in Eraemean zone, we propose to get a well resolved phylogenetic tree for the 45 species of Suaveolentes having Nicotiana africana as outgroup using high throughput DNA sequencing technique. This technique will deliver tens of thousands of variable sites that are expected to provide great power for phylogenetic inference and species delimitation. A population level analysis based on the same technique will investigate population-level evolutionary processes in order to understand in detail the evolution of this group. This information will be used to investigate the historical demography of this group, including timing, which will give a clue about distribution of sect. Suaveolentes as well as population size variation and geneflow. Well resolved phylogenetic relationships will also clarify the biogeographical pattern and changes in chromosome numbers and genome sizes across the section Suaveolentes.
This project had a good impact on the public, having Nicotiana experts and field guide in Australia helped collection of material needed in time. Seed material from the collected species were established in the glass house (at the quarantine glass house) of the Kew, Royal Botanical Gardens. Established seedlings were closely observed and studied carefully. New species identified in this study was described by both painting and drawing. Thus many people contributed for the project. The lab work was done by trained technicians in the laboratory of the Division of Systematics and Evolutionary Botany, Postdoc involved in the project played a big role in publishing the work. This outcome is useful for Scientists and others working on Nicotiana (Solanaceae) as well as other plant groups.
- Universität Wien - 100%
Research Output
- 44 Citations
- 8 Publications
- 2 Artistic Creations
- 3 Methods & Materials
- 2 Datasets & models
- 2 Disseminations
- 1 Scientific Awards
-
2024
Title Taxonomy of the Nicotiana megalosiphon species complex (Solanaceae; Nicotiana section Suaveolentes): analyses of RADseq data identifies a new cryptic species DOI 10.1071/sb24021 Type Journal Article Author Chase M Journal Australian Systematic Botany -
2024
Title Recent speciation and adaptation to aridity in the ecologically diverse Pilbara region of Australia enabled the native tobaccos (Nicotiana; Solanaceae) to colonize all Australian deserts. DOI 10.1111/mec.17498 Type Journal Article Author Cauz-Santos La Journal Molecular ecology -
2021
Title Phylogenomics of Nicotiana section Suaveolentes (Solanaceae), with a focus on N. Benthamiana Type Other Author Aljaž Jakob -
2022
Title Genomic insights into recent species divergence in Nicotiana benthamiana and natural variation in Rdr1 gene controlling viral susceptibility DOI 10.1111/tpj.15801 Type Journal Article Author Cauz-Santos L Journal The Plant Journal Pages 7-18 Link Publication -
2023
Title Nine new species of Australian Nicotiana (Solanaceae) DOI 10.1071/sb23001 Type Journal Article Author Chase M Journal Australian Systematic Botany -
2022
Title Taxonomy of the Australian Nicotiana benthamiana complex (Nicotiana section Suaveolentes; Solanaceae): five species, four newly described, with distinct ranges and morphologies DOI 10.1071/sb22009 Type Journal Article Author Chase M Journal Australian Systematic Botany Pages 345-363 Link Publication -
2022
Title Down, then up: non-parallel genome size changes and a descending chromosome series in a recent radiation of the Australian allotetraploid plant species, Nicotiana section Suaveolentes (Solanaceae) DOI 10.1093/aob/mcac006 Type Journal Article Author Chase M Journal Annals of Botany Pages 123-142 Link Publication -
2022
Title Variation of the Rdr1 gene insertion in wild populations of Nicotiana benthamiana (Solanaceae) and insights into recent species divergence DOI 10.1101/2022.02.01.478068 Type Preprint Author Cauz-Santos L Pages 2022.02.01.478068 Link Publication
-
2023
Link
Title Nine new species of Australian Nicotiana (Solanaceae) Type Artwork Link Link -
2022
Link
Title Taxonomy of the Australian Nicotiana benthamiana complex (Nicotiana section Suaveolentes; Solanaceae): five species, four newly described, with distinct ranges and morphologies Type Artwork Link Link
-
2024
Link
Title Biogeography and Ancestral range estimation Type Improvements to research infrastructure Public Access Link Link -
2023
Link
Title Chromosome counts and genome size measurements Type Improvements to research infrastructure Public Access Link Link -
2022
Link
Title Restriction Site Associated DNA sequencing (RADseq.) Type Improvements to research infrastructure Public Access Link Link
-
2024
Link
Title Attending the International Congress of the Brazilian Genetic Society Type A talk or presentation Link Link -
2023
Link
Title Conference and Seminars attended by the PI, collaborator, Postdoc and the student involved in this project Type Participation in an activity, workshop or similar Link Link
-
2024
Title invited talk at the International Congress of the Brazilian Genetics society Type Personally asked as a key note speaker to a conference Level of Recognition Continental/International