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Phylogenetics & Biogeography of Nicotiana sect.Suaveolentes

Phylogenetics & Biogeography of Nicotiana sect.Suaveolentes

Mary Rosabelle Samuel (ORCID: 0000-0003-0197-4854)
  • Grant DOI 10.55776/P33028
  • Funding program Principal Investigator Projects
  • Status ended
  • Start January 1, 2020
  • End June 30, 2024
  • Funding amount € 336,118
  • Project website

Disciplines

Biology (100%)

Keywords

    Nicotiana, Phylogenetics, Evolution, Biogeography, RADseq., Suaveolentes

Abstract Final report

The genus Nicotiana belongs to the plant family Solanaceae that has a great economic importance. This family includes several major crop species (e.g. potato Solanum tuberosum, tomato S.lycopersicum, eggplant - S. melongena, chilli peppers Capsicum spp., Tobacco - Nicotiana spp), as well as ornamentals (e.g. Petunia spp.). In this proposal we are investigating the section Suaveolentes of genus Nicotiana, which is largely endemic to Australia. Section Suaveolentes appears to be the result of natural ancient allopolyploidisation, i.e. hybridisation between individuals belonging to two, not closely related species accompanied by whole genome doubling. As new species of Nicotiana sect. Suaveolentes evolved and chromosome numbers decreased, they occupied dry interior of central and southern Australia, where they are now most diverse. However presently, two radically different explanations exist for the current distribution of N. sect. Suaveolentes in Australia. Previously, the researchers in Australia believed that the ancestor of Nicotiana sect. Suaveolentes is approximately 20 million years old and, like nearly all other Australian plant groups, formerly widespread across the continent, long before aridification commenced seven million years ago. Thus, it was accepted that the current distributions of the modern set of species are due to vicariance over 20 million years.In contrast to this, recent work done using molecular clock methods and a small number of species in section Suaveolentes and found that the age of the section is only six million years. Dispersal into the Eremaean Zone only commenced as recently as two million years. To test these two different opinions on the distribution of this section in Eraemean zone, we propose to get a well resolved phylogenetic tree for the 45 species of Suaveolentes having Nicotiana africana as outgroup using high throughput DNA sequencing technique. This technique will deliver tens of thousands of variable sites that are expected to provide great power for phylogenetic inference and species delimitation. A population level analysis based on the same technique will investigate population-level evolutionary processes in order to understand in detail the evolution of this group. This information will be used to investigate the historical demography of this group, including timing, which will give a clue about distribution of sect. Suaveolentes as well as population size variation and geneflow. Well resolved phylogenetic relationships will also clarify the biogeographical pattern and changes in chromosome numbers and genome sizes across the section Suaveolentes.

This project had a good impact on the public, having Nicotiana experts and field guide in Australia helped collection of material needed in time. Seed material from the collected species were established in the glass house (at the quarantine glass house) of the Kew, Royal Botanical Gardens. Established seedlings were closely observed and studied carefully. New species identified in this study was described by both painting and drawing. Thus many people contributed for the project. The lab work was done by trained technicians in the laboratory of the Division of Systematics and Evolutionary Botany, Postdoc involved in the project played a big role in publishing the work. This outcome is useful for Scientists and others working on Nicotiana (Solanaceae) as well as other plant groups.

Research institution(s)
  • Universität Wien - 100%
International project participants
  • Mark W. Chase, Royal Botanic Gardens

Research Output

  • 44 Citations
  • 8 Publications
  • 2 Artistic Creations
  • 3 Methods & Materials
  • 2 Datasets & models
  • 2 Disseminations
  • 1 Scientific Awards
Publications
  • 2024
    Title Taxonomy of the Nicotiana megalosiphon species complex (Solanaceae; Nicotiana section Suaveolentes): analyses of RADseq data identifies a new cryptic species
    DOI 10.1071/sb24021
    Type Journal Article
    Author Chase M
    Journal Australian Systematic Botany
  • 2024
    Title Recent speciation and adaptation to aridity in the ecologically diverse Pilbara region of Australia enabled the native tobaccos (Nicotiana; Solanaceae) to colonize all Australian deserts.
    DOI 10.1111/mec.17498
    Type Journal Article
    Author Cauz-Santos La
    Journal Molecular ecology
  • 2021
    Title Phylogenomics of Nicotiana section Suaveolentes (Solanaceae), with a focus on N. Benthamiana
    Type Other
    Author Aljaž Jakob
  • 2022
    Title Genomic insights into recent species divergence in Nicotiana benthamiana and natural variation in Rdr1 gene controlling viral susceptibility
    DOI 10.1111/tpj.15801
    Type Journal Article
    Author Cauz-Santos L
    Journal The Plant Journal
    Pages 7-18
    Link Publication
  • 2023
    Title Nine new species of Australian Nicotiana (Solanaceae)
    DOI 10.1071/sb23001
    Type Journal Article
    Author Chase M
    Journal Australian Systematic Botany
  • 2022
    Title Taxonomy of the Australian Nicotiana benthamiana complex (Nicotiana section Suaveolentes; Solanaceae): five species, four newly described, with distinct ranges and morphologies
    DOI 10.1071/sb22009
    Type Journal Article
    Author Chase M
    Journal Australian Systematic Botany
    Pages 345-363
    Link Publication
  • 2022
    Title Down, then up: non-parallel genome size changes and a descending chromosome series in a recent radiation of the Australian allotetraploid plant species, Nicotiana section Suaveolentes (Solanaceae)
    DOI 10.1093/aob/mcac006
    Type Journal Article
    Author Chase M
    Journal Annals of Botany
    Pages 123-142
    Link Publication
  • 2022
    Title Variation of the Rdr1 gene insertion in wild populations of Nicotiana benthamiana (Solanaceae) and insights into recent species divergence
    DOI 10.1101/2022.02.01.478068
    Type Preprint
    Author Cauz-Santos L
    Pages 2022.02.01.478068
    Link Publication
Artistic Creations
  • 2023 Link
    Title Nine new species of Australian Nicotiana (Solanaceae)
    Type Artwork
    Link Link
  • 2022 Link
    Title Taxonomy of the Australian Nicotiana benthamiana complex (Nicotiana section Suaveolentes; Solanaceae): five species, four newly described, with distinct ranges and morphologies
    Type Artwork
    Link Link
Methods & Materials
  • 2024 Link
    Title Biogeography and Ancestral range estimation
    Type Improvements to research infrastructure
    Public Access
    Link Link
  • 2023 Link
    Title Chromosome counts and genome size measurements
    Type Improvements to research infrastructure
    Public Access
    Link Link
  • 2022 Link
    Title Restriction Site Associated DNA sequencing (RADseq.)
    Type Improvements to research infrastructure
    Public Access
    Link Link
Datasets & models
  • 2021 Link
    Title RADseq data Nicotiana section Suaveolentes
    Type Database/Collection of data
    Public Access
    Link Link
  • 2020 Link
    Title Sampling material of Nicotiana section Suaveolentes
    Type Database/Collection of data
    Public Access
    Link Link
Disseminations
  • 2024 Link
    Title Attending the International Congress of the Brazilian Genetic Society
    Type A talk or presentation
    Link Link
  • 2023 Link
    Title Conference and Seminars attended by the PI, collaborator, Postdoc and the student involved in this project
    Type Participation in an activity, workshop or similar
    Link Link
Scientific Awards
  • 2024
    Title invited talk at the International Congress of the Brazilian Genetics society
    Type Personally asked as a key note speaker to a conference
    Level of Recognition Continental/International

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