Emerging Infectious Lung Disease Monitor
Emerging Infectious Lung Disease Monitor
Disciplines
Computer Sciences (60%); Medical-Theoretical Sciences, Pharmacy (40%)
Keywords
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Machine Learning,
Medical Imaging,
Lung Disease,
Computed Tomography
The world-wide spread COVID-19 resulted in a global health care crisis. It made clear that we need the capability to detect an epidemic or pandemic disease early, that we need to be able to diagnose it rapidly, and that we require mechanisms to identify the correct treatment for individual patients. Lung imaging had an important role, shifting from an initially diagnostic- to a prognostic tool informing individual care. The project is a close interdisciplinary collaboration between experts in machine learning and radiology. It will develop new methods in the area of machine learning and image analysis to address these challenges. It will investigate and advance methods for the detection of anomalies and create techniques for the identification of newly emerging phenotypes in the patient population. This will be based on imaging data and clinical information of patients, and is challenging since it involves identifying markers that are not yet known. The second main aim is to develop models that can predict the trajectories of individual patients during their disease and recovery to guide optimal individual treatment. Here, the challenge is to learn from the real-world data collected during the early phase of a pandemic, when no treatment guidelines are available, and the observed patient histories are very diverse. The project will be embedded in international collaborations to ensure the validation of the novel methodology.
- Helmut Prosch, Medizinische Universität Wien , national collaboration partner
- Lucian Beer, Medizinische Universität Wien , national collaboration partner
- Ulrike Attenberger, Universitätsklinikum Bonn - Germany
- Evis Sala, Policlinico Universitario Agostino Gemelli - Italy
- Carola Bibiane Schönlieb, University of Cambridge
Research Output
- 257 Citations
- 23 Publications
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2025
Title Measuring the effects of motion corruption in fetal fMRI DOI 10.1002/hbm.26806 Type Journal Article Author Taymourtash A Journal Human Brain Mapping Link Publication -
2025
Title Identifying signatures of image phenotypes to track treatment response in liver disease DOI 10.1016/j.artmed.2025.103223 Type Journal Article Author Perkonigg M Journal Artificial Intelligence in Medicine Pages 103223 Link Publication -
2022
Title Spatio-Temporal Motion Correction and Iterative Reconstruction of In-Utero Fetal fMRI DOI 10.1007/978-3-031-16446-0_57 Type Book Chapter Author Taymourtash A Publisher Springer Nature Pages 603-612 -
2022
Title Spatio-temporal motion correction and iterative reconstruction of in-utero fetal fMRI DOI 10.48550/arxiv.2209.08272 Type Preprint Author Taymourtash A -
2022
Title Fetal Brain Tissue Annotation and Segmentation Challenge Results DOI 10.48550/arxiv.2204.09573 Type Preprint Author Payette K -
2024
Title Artificial intelligence in respiratory pandemics—ready for disease X? A scoping review DOI 10.1007/s00330-024-11183-8 Type Journal Article Author Straub J Journal European Radiology Pages 1583-1593 Link Publication -
2023
Title Fetal brain tissue annotation and segmentation challenge results DOI 10.1016/j.media.2023.102833 Type Journal Article Author Payette K Journal Medical Image Analysis Pages 102833 Link Publication -
2023
Title Evolution of cortical geometry and its link to function, behaviour and ecology DOI 10.1038/s41467-023-37574-x Type Journal Article Author Schwartz E Journal Nature Communications Pages 2252 Link Publication -
2022
Title Motion Correction and Volumetric Reconstruction for Fetal Functional Magnetic Resonance Imaging Data DOI 10.48550/arxiv.2202.05863 Type Preprint Author Sobotka D -
2022
Title Impact of a content-based image retrieval system on the interpretation of chest CTs of patients with diffuse parenchymal lung disease DOI 10.1007/s00330-022-08973-3 Type Journal Article Author Röhrich S Journal European Radiology Pages 360-367 Link Publication -
2022
Title Motion correction and volumetric reconstruction for fetal functional magnetic resonance imaging data DOI 10.1016/j.neuroimage.2022.119213 Type Journal Article Author Sobotka D Journal NeuroImage Pages 119213 Link Publication -
2024
Title Contrast Agent Dynamics Determine Radiomics Profiles in Oncologic Imaging DOI 10.3390/cancers16081519 Type Journal Article Author Watzenboeck M Journal Cancers Pages 1519 Link Publication -
2024
Title Improving Vessel Segmentation with Multi-Task Learning and Auxiliary Data Available Only During Model Training DOI 10.1016/j.compmedimag.2024.102369 Type Journal Article Author Sobotka D Journal Computerized Medical Imaging and Graphics Pages 102369 Link Publication -
2024
Title Deep learning links localized digital pathology phenotypes with transcriptional subtype and patient outcome in glioblastoma DOI 10.1093/gigascience/giae057 Type Journal Article Author Roetzer-Pejrimovsky T Journal GigaScience Link Publication -
2021
Title Dynamic memory to alleviate catastrophic forgetting in continual learning with medical imaging DOI 10.1038/s41467-021-25858-z Type Journal Article Author Perkonigg M Journal Nature Communications Pages 5678 Link Publication -
2023
Title Innovations in Deep Learning to Predict Individual Risk and Treatment Outcome. DOI 10.1148/radiol.231116 Type Journal Article Author Langs G Journal Radiology -
2023
Title Deep learning for predicting future lesion emergence in high-risk breast MRI screening: a feasibility study DOI 10.1186/s41747-023-00343-y Type Journal Article Author Burger B Journal European Radiology Experimental Pages 32 Link Publication -
2022
Title Fetal development of functional thalamocortical and cortico–cortical connectivity DOI 10.1093/cercor/bhac446 Type Journal Article Author Taymourtash A Journal Cerebral Cortex (New York, NY) Pages 5613-5624 Link Publication -
2022
Title Unsupervised machine learning identifies predictive progression markers of IPF DOI 10.1007/s00330-022-09101-x Type Journal Article Author Pan J Journal European Radiology Pages 925-935 Link Publication -
2022
Title Continual Active Learning Using Pseudo-Domains for Limited Labelling Resources and Changing Acquisition Characteristics DOI 10.59275/j.melba.2022-4g6b Type Journal Article Author Perkonigg M Journal Machine Learning for Biomedical Imaging Pages 1-28 Link Publication -
2021
Title 4D iterative reconstruction of brain fMRI in the moving fetus DOI 10.48550/arxiv.2111.11394 Type Preprint Author Taymourtash A -
2021
Title Continual Active Learning Using Pseudo-Domains for Limited Labelling Resources and Changing Acquisition Characteristics DOI 10.48550/arxiv.2111.13069 Type Preprint Author Perkonigg M -
2021
Title Pseudo-domains in imaging data improve prediction of future disease status in multi-center studies DOI 10.48550/arxiv.2111.07634 Type Preprint Author Perkonigg M