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In vitro modelling of dopamine pathways in fused organoids.

Jürgen A. Knoblich (ORCID: 0000-0002-6751-3404)
  • Grant DOI 10.55776/P35369
  • Funding program Principal Investigator Projects
  • Status Ended
  • Start January 1, 2022
  • End December 31, 2025
  • Funding amount € 393,555

Disciplines

Biology (100%)

Keywords

  • Organoid,
  • Stem Cell Biology,
  • Nervous System Develo
Abstract Final report

Our group is interested in understanding human brain development in health and disease. A major challenge in the effort to study the biology and disease of human tissues is material accessibility. To overcome this obstacle, our group developed new technology by generating a 3D model system called brain organoids. This model system is derived from human stem cells and can recapitulate human-specific aspects of brain development. Using organoids permits us to model disorders which affect the nervous system and consequently offers the potential to fundamentally change disease research. In this project, we aim to bring brain organoid technology to the next level by instating neurological diseases in the lab, to understand them with the ultimate purpose to drive the generation of novel therapies. We hypothesize that the cross talk between cells of different brain regions can be studied in our model system making it a valuable tool to investigate the initial stages of a specific brain disorder before this becomes a recognizable pathology. To achieve this, we will generate organoids fusing distinct brain regions that are associated with specific brain circuits in a developmentally representative way. This will allow us to study neurological interactions between these regions in a petridish, for the first time. The new organoid model enables us to study disease related aspects of a neurological circuit, which is particularly targeted by addictive drugs and pharmaceutical compounds. The proposed project will recreate neurological disease pathology in the lab going far beyond existing models and establishing an innovative human disease model that can refine and complement existing research into these neurological disorders.

Recreating the Human Brain's Dopamine System in the Lab Animal models have historically provided foundational insights into neuroscience; however, developing precise treatments for human neurological disorders requires establishing human-specific models to reduce and ultimately replace their use. The human brain relies on a chemical messenger called dopamine to control our movements and process feelings of reward. When this system breaks down, it can lead to severe movement disorders like Parkinson's disease or contribute to psychiatric conditions and addiction. Because animal brains develop differently and much faster than human brains, certain aspects of human diseases-like the specific loss of dopamine in Parkinson's-cannot be completely or accurately recreated in animals. To bridge this gap, our research team has successfully built living, three-dimensional models of the human brain's reward and movement system to study neurological diseases without relying on animal testing. We utilised stem cells to grow miniaturised human brain tissues, known as "organoids", specifically focusing on three distinct regions: the midbrain (where dopamine is produced), the striatum, and the cortex. By placing these tissues next to each other in a custom-designed mould, they naturally fused together into a single, connected structure. Remarkably, the dopamine-producing cells in the midbrain grew long, functional connections that reached out and wired into the other brain regions, exactly as they do in a real developing human brain. We confirmed that these lab-grown networks were electrically active and fully capable of releasing dopamine. This technological leap has profound implications for medicine, society, and research ethics. First, it advances the development of Parkinson's treatments. By injecting healthy dopamine-producing stem cells into our model, we observed them surviving, maturing, and integrating into the existing brain network, demonstrating that this system is an excellent testing ground for promising stem cell replacement therapies. Second, it offers unprecedented insights into addiction. When we exposed these brain models to cocaine, we discovered that chronic exposure caused long-lasting changes to the brain's physical connections and electrical activity, which persisted even after the drug was removed. Most importantly, this human-specific model provides a powerful, ethical alternative to animal testing. It directly supports the "3Rs" initiative (Replacement, Reduction, and Refinement) by providing a more accurate and highly effective platform for testing pharmaceutical drugs and exploring brain diseases in a human context.

Research institution(s)
  • IMBA – Institut für Molekulare Biotechnologie GmbH - 100%

Research Output

  • 538 Citations
  • 16 Publications
  • 3 Policies
  • 18 Disseminations
  • 36 Scientific Awards
Publications
  • 2025
    Title A cost- and time-efficient method for high-throughput cryoprocessing and tissue analysis using multiplexed tissue molds
    DOI 10.1016/j.crmeth.2025.101023
    Type Journal Article
    Author Reumann D
    Journal Cell Reports Methods
    Pages 101023
    Link Publication
  • 2025
    Title Advancing autism research: Insights from brain organoid modeling
    DOI 10.1016/j.conb.2025.103030
    Type Journal Article
    Author Li C
    Journal Current Opinion in Neurobiology
    Pages 103030
    Link Publication
  • 2025
    Title Cerebral Organoids Uncover Mechanisms of Neural Activity Changes in Epileptogenesis
    DOI 10.1101/2025.08.26.672285
    Type Preprint
    Author Wong S
    Pages 2025.08.26.672285
    Link Publication
  • 2025
    Title Quantitative profiling of human brain organoid cell diversity across four protocols and multiple cell lines
    DOI 10.1016/j.celrep.2025.116168
    Type Journal Article
    Author Naas J
    Journal Cell Reports
    Pages 116168
    Link Publication
  • 2022
    Title Gruffi: an algorithm for computational removal of stressed cells from brain organoid transcriptomic datasets
    DOI 10.15252/embj.2022111118
    Type Journal Article
    Author Vértesy Á
    Journal The EMBO Journal
    Link Publication
  • 2023
    Title Microfibrous Scaffolds Guide Stem Cell Lumenogenesis and Brain Organoid Engineering
    DOI 10.1002/adma.202300305
    Type Journal Article
    Author Ritzau-Reid K
    Journal Advanced Materials
    Link Publication
  • 2022
    Title Integrated transcriptome and proteome analysis in human brain organoids reveals posttranscriptional regulation of ribosomal genes
    DOI 10.1101/2022.10.07.511280
    Type Preprint
    Author Sidhaye J
    Pages 2022.10.07.511280
    Link Publication
  • 2022
    Title Human cerebral organoids — a new tool for clinical neurology research
    DOI 10.1038/s41582-022-00723-9
    Type Journal Article
    Author Eichmüller O
    Journal Nature Reviews Neurology
    Pages 661-680
    Link Publication
  • 2022
    Title In vitro modeling of the human dopaminergic system
    Type PhD Thesis
    Author Daniel Reumann
  • 2022
    Title Morphogenesis and development of human telencephalic organoids in the absence and presence of exogenous ECM
    DOI 10.1101/2022.12.06.519271
    Type Preprint
    Author Martins-Costa C
    Pages 2022.12.06.519271
    Link Publication
  • 2024
    Title ARID1B controls transcriptional programs of axon projection in an organoid model of the human corpus callosum
    DOI 10.1016/j.stem.2024.04.014
    Type Journal Article
    Author Martins-Costa C
    Journal Cell Stem Cell
    Link Publication
  • 2024
    Title Cerebral organoids display dynamic clonal growth and tunable tissue replenishment
    DOI 10.1038/s41556-024-01412-z
    Type Journal Article
    Author Lindenhofer D
    Journal Nature Cell Biology
    Pages 710-718
    Link Publication
  • 2024
    Title A polarized FGF8 source specifies frontotemporal signatures in spatially oriented cell populations of cortical assembloids
    DOI 10.1038/s41592-024-02412-5
    Type Journal Article
    Author Bosone C
    Journal Nature Methods
    Pages 2147-2159
    Link Publication
  • 2023
    Title Integrated transcriptome and proteome analysis reveals posttranscriptional regulation of ribosomal genes in human brain organoids
    DOI 10.7554/elife.85135
    Type Preprint
    Author Sidhaye J
    Link Publication
  • 2023
    Title Morphogenesis and development of human telencephalic organoids in the absence and presence of exogenous extracellular matrix.
    DOI 10.15252/embj.2022113213
    Type Journal Article
    Author Martins-Costa C
    Journal The EMBO journal
  • 2023
    Title In vitro modeling of the human dopaminergic system using spatially arranged ventral midbrain–striatum–cortex assembloids
    DOI 10.1038/s41592-023-02080-x
    Type Journal Article
    Author Reumann D
    Journal Nature Methods
    Pages 2034-2047
    Link Publication
Policies
  • 2025
    Title A framework for neural organoids, assembloids and transplantation studies - Knoblich
    DOI 10.1038/s41586-024-08487-6
    Type Contribution to new or improved professional practice
  • 2024 Link
    Title Participation in the International Commission of the Elite Network of Bavaria - Knoblich
    Type Participation in a guidance/advisory committee
    Link Link
  • 2024
    Title Advisor of the Howard Hughes Research Institute - Knoblich
    Type Participation in a guidance/advisory committee
Disseminations
  • 2023
    Title NHM's "Vielfalt kennenlernen: Zellen"
    Type Participation in an activity, workshop or similar
  • 2022
    Title Lange Nacht der Forschung/Long Night of Research
    Type A talk or presentation
  • 2023
    Title Health Science Forum Vienna II
    Type Participation in an activity, workshop or similar
  • 2022
    Title NHM/Deck50: "Vielfalt kennenlernen: Zellen"
    Type A talk or presentation
  • 2024
    Title UniStem Day 2024 - Knoblich
    Type Participation in an activity, workshop or similar
  • 2024
    Title Visit of a Korean Delegation of UNIST - Knoblich
    Type Participation in an activity, workshop or similar
  • 2022
    Title Wiener Kinderuni
    Type A talk or presentation
  • 2023
    Title Visit of OeAW Vice President Ulrike Diebold at IMBA
    Type A talk or presentation
  • 2024
    Title Long Night of Research 2024 - Knoblich
    Type A talk or presentation
  • 2022
    Title Wiener Forschungsfest/Vienna Science Festival
    Type Participation in an activity, workshop or similar
  • 2023
    Title OeAW Podcasts for IMBA20
    Type A broadcast e.g. TV/radio/film/podcast (other than news/press)
  • 2022
    Title Press meeting at IMBA
    Type A press release, press conference or response to a media enquiry/interview
  • 2024
    Title KILT Day - Knoblich
    Type A talk or presentation
  • 2024
    Title Business Lunch: Industrie und Spitzenforschung im Dialog - Knoblich
    Type A talk or presentation
  • 2022
    Title Visit of Heinz Faßmann, President of the Austrian Academy of Sciences
    Type A talk or presentation
  • 2025
    Title Visit of Lions Club Baden-Helenental - Knoblich
    Type A talk or presentation
  • 2022
    Title European Researchers' Night
    Type Participation in an activity, workshop or similar
  • 2023
    Title Organoid workshop
    Type Participation in an activity, workshop or similar
Scientific Awards
  • 2025
    Title Conference on Advancements in Organoid Sciences (CAOS) - Knoblich
    Type Personally asked as a key note speaker to a conference
    Level of Recognition Continental/International
  • 2025
    Title Leopoldina-Vorlesung - Knoblich
    Type Personally asked as a key note speaker to a conference
    Level of Recognition Continental/International
  • 2025
    Title Neural Stem Cells: Capturing Complexity and Plasticity - Knoblich
    Type Personally asked as a key note speaker to a conference
    Level of Recognition Continental/International
  • 2025
    Title The First International Organoid Conference - Knoblich
    Type Personally asked as a key note speaker to a conference
    Level of Recognition Continental/International
  • 2025
    Title Next-gen organ-on-chips & organoids workshop - Knoblich
    Type Personally asked as a key note speaker to a conference
    Level of Recognition Continental/International
  • 2024
    Title Kardinal-Innitzer-Würdigungspreis (Appreciation Prize) - Knoblich
    Type Research prize
    Level of Recognition National (any country)
  • 2024
    Title Gordon Research Conference - Knoblich
    Type Personally asked as a key note speaker to a conference
    Level of Recognition National (any country)
  • 2024
    Title Cold Spring Harbor Laboratories 3D Modelling Meeting - Knoblich
    Type Personally asked as a key note speaker to a conference
    Level of Recognition Continental/International
  • 2024
    Title German Academy of Science Leopoldina, elected Member, 2024 - Knoblich
    Type Awarded honorary membership, or a fellowship, of a learned society
    Level of Recognition National (any country)
  • 2024
    Title 2nd International symposium of neurobiology - Knoblich
    Type Personally asked as a key note speaker to a conference
    Level of Recognition Continental/International
  • 2022
    Title Invited speaker: Hydra organoid meeting
    Type Personally asked as a key note speaker to a conference
    Level of Recognition National (any country)
  • 2022
    Title Workshop on Stem Cells and Their Promise for Regenerative Medicine
    Type Personally asked as a key note speaker to a conference
    Level of Recognition Regional (any country)
  • 2022
    Title Invited speaker: Symposium Comparative Medicine 2022
    Type Personally asked as a key note speaker to a conference
    Level of Recognition National (any country)
  • 2022
    Title Invited talk: 2022 International Society for Stem Cell Research (ISSCR) Annual Meeting
    Type Personally asked as a key note speaker to a conference
    Level of Recognition Continental/International
  • 2022
    Title Invited speaker: Maintenance and Differentiation of Stem Cells in Development and Disease
    Type Personally asked as a key note speaker to a conference
    Level of Recognition National (any country)
  • 2022
    Title Invited speaker: HUMAN CELL ATLAS 2022 GENERAL MEETING
    Type Personally asked as a key note speaker to a conference
    Level of Recognition Continental/International
  • 2022
    Title Invited speaker: Development and 3D Modeling of the Human Brain
    Type Personally asked as a key note speaker to a conference
    Level of Recognition Continental/International
  • 2022
    Title Invited talk: Gordon conference: Signal Transduction by Engineered Extracellular Matrices
    Type Personally asked as a key note speaker to a conference
    Level of Recognition National (any country)
  • 2022
    Title Invited speaker: Pontifical Academy of Sciences Plenary Session 2022 Theme: "Basic science for human development, peace, and planetary health"
    Type Personally asked as a key note speaker to a conference
    Level of Recognition National (any country)
  • 2024
    Title 2024 Austrian State Prize for the Promotion of Alternative Methods to Animal Experiments
    Type Research prize
    Level of Recognition National (any country)
  • 2024
    Title Centuri Seminar - Knoblich
    Type Personally asked as a key note speaker to a conference
    Level of Recognition Continental/International
  • 2024
    Title CHS Symposium - Knoblich
    Type Personally asked as a key note speaker to a conference
    Level of Recognition National (any country)
  • 2024
    Title Houskaprize - Knoblich
    Type Research prize
    Level of Recognition National (any country)
  • 2023
    Title Keynote: Geist International Science Festival - DAI Heidelberg
    Type Personally asked as a key note speaker to a conference
    Level of Recognition National (any country)
  • 2023
    Title Invited speaker: "International Heidelberg Symposium on Stem Cells and Cancer"
    Type Personally asked as a key note speaker to a conference
    Level of Recognition National (any country)
  • 2023
    Title Keynote: Functional Genomics of Human Brain Development and Disease Gordon Research Conference
    Type Personally asked as a key note speaker to a conference
    Level of Recognition National (any country)
  • 2023
    Title Invited Speaker: PNAS Workshop: Neuro Cognition
    Type Personally asked as a key note speaker to a conference
    Level of Recognition National (any country)
  • 2023
    Title Invited speaker: EMBO | EMBL Symposium Organoids: modelling organ development and disease in 3D culture
    Type Personally asked as a key note speaker to a conference
    Level of Recognition National (any country)
  • 2023
    Title Keynote: Leopoldina
    Type Personally asked as a key note speaker to a conference
    Level of Recognition National (any country)
  • 2023
    Title Keynote: 47. ÖGP / OGTC JAHRESTAGUNG
    Type Personally asked as a key note speaker to a conference
    Level of Recognition National (any country)
  • 2023
    Title Invited talk: ISSCR Vienna: Elucidating Principles of Development with Stem Cells
    Type Personally asked as a key note speaker to a conference
    Level of Recognition National (any country)
  • 2023
    Title Invited speaker: ReMS Lecture Standford University
    Type Personally asked as a key note speaker to a conference
    Level of Recognition National (any country)
  • 2023
    Title Invited speaker: 87th Cold Spring Harbor Laboratory Symposium on Quantitative Biology
    Type Personally asked as a key note speaker to a conference
    Level of Recognition Continental/International
  • 2023
    Title Keynote: Stowers Research Conference: Stem Cells, Tissue Plasticity, and Regenerative Biology
    Type Personally asked as a key note speaker to a conference
    Level of Recognition National (any country)
  • 2023
    Title Keynote: SY-Stem 2023
    Type Personally asked as a key note speaker to a conference
    Level of Recognition National (any country)
  • 2022
    Title Keynote: Stem cell systems in development, disease and regeneration
    Type Personally asked as a key note speaker to a conference
    Level of Recognition Continental/International

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