In vitro modelling of dopamine pathways in fused organoids.
Disciplines
Biology (100%)
Keywords
- Organoid,
- Stem Cell Biology,
- Nervous System Develo
Our group is interested in understanding human brain development in health and disease. A major challenge in the effort to study the biology and disease of human tissues is material accessibility. To overcome this obstacle, our group developed new technology by generating a 3D model system called brain organoids. This model system is derived from human stem cells and can recapitulate human-specific aspects of brain development. Using organoids permits us to model disorders which affect the nervous system and consequently offers the potential to fundamentally change disease research. In this project, we aim to bring brain organoid technology to the next level by instating neurological diseases in the lab, to understand them with the ultimate purpose to drive the generation of novel therapies. We hypothesize that the cross talk between cells of different brain regions can be studied in our model system making it a valuable tool to investigate the initial stages of a specific brain disorder before this becomes a recognizable pathology. To achieve this, we will generate organoids fusing distinct brain regions that are associated with specific brain circuits in a developmentally representative way. This will allow us to study neurological interactions between these regions in a petridish, for the first time. The new organoid model enables us to study disease related aspects of a neurological circuit, which is particularly targeted by addictive drugs and pharmaceutical compounds. The proposed project will recreate neurological disease pathology in the lab going far beyond existing models and establishing an innovative human disease model that can refine and complement existing research into these neurological disorders.
Recreating the Human Brain's Dopamine System in the Lab Animal models have historically provided foundational insights into neuroscience; however, developing precise treatments for human neurological disorders requires establishing human-specific models to reduce and ultimately replace their use. The human brain relies on a chemical messenger called dopamine to control our movements and process feelings of reward. When this system breaks down, it can lead to severe movement disorders like Parkinson's disease or contribute to psychiatric conditions and addiction. Because animal brains develop differently and much faster than human brains, certain aspects of human diseases-like the specific loss of dopamine in Parkinson's-cannot be completely or accurately recreated in animals. To bridge this gap, our research team has successfully built living, three-dimensional models of the human brain's reward and movement system to study neurological diseases without relying on animal testing. We utilised stem cells to grow miniaturised human brain tissues, known as "organoids", specifically focusing on three distinct regions: the midbrain (where dopamine is produced), the striatum, and the cortex. By placing these tissues next to each other in a custom-designed mould, they naturally fused together into a single, connected structure. Remarkably, the dopamine-producing cells in the midbrain grew long, functional connections that reached out and wired into the other brain regions, exactly as they do in a real developing human brain. We confirmed that these lab-grown networks were electrically active and fully capable of releasing dopamine. This technological leap has profound implications for medicine, society, and research ethics. First, it advances the development of Parkinson's treatments. By injecting healthy dopamine-producing stem cells into our model, we observed them surviving, maturing, and integrating into the existing brain network, demonstrating that this system is an excellent testing ground for promising stem cell replacement therapies. Second, it offers unprecedented insights into addiction. When we exposed these brain models to cocaine, we discovered that chronic exposure caused long-lasting changes to the brain's physical connections and electrical activity, which persisted even after the drug was removed. Most importantly, this human-specific model provides a powerful, ethical alternative to animal testing. It directly supports the "3Rs" initiative (Replacement, Reduction, and Refinement) by providing a more accurate and highly effective platform for testing pharmaceutical drugs and exploring brain diseases in a human context.
Research Output
- 538 Citations
- 16 Publications
- 3 Policies
- 18 Disseminations
- 36 Scientific Awards
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2025
Title A cost- and time-efficient method for high-throughput cryoprocessing and tissue analysis using multiplexed tissue molds DOI 10.1016/j.crmeth.2025.101023 Type Journal Article Author Reumann D Journal Cell Reports Methods Pages 101023 Link Publication -
2025
Title Advancing autism research: Insights from brain organoid modeling DOI 10.1016/j.conb.2025.103030 Type Journal Article Author Li C Journal Current Opinion in Neurobiology Pages 103030 Link Publication -
2025
Title Cerebral Organoids Uncover Mechanisms of Neural Activity Changes in Epileptogenesis DOI 10.1101/2025.08.26.672285 Type Preprint Author Wong S Pages 2025.08.26.672285 Link Publication -
2025
Title Quantitative profiling of human brain organoid cell diversity across four protocols and multiple cell lines DOI 10.1016/j.celrep.2025.116168 Type Journal Article Author Naas J Journal Cell Reports Pages 116168 Link Publication -
2022
Title Gruffi: an algorithm for computational removal of stressed cells from brain organoid transcriptomic datasets DOI 10.15252/embj.2022111118 Type Journal Article Author Vértesy Á Journal The EMBO Journal Link Publication -
2023
Title Microfibrous Scaffolds Guide Stem Cell Lumenogenesis and Brain Organoid Engineering DOI 10.1002/adma.202300305 Type Journal Article Author Ritzau-Reid K Journal Advanced Materials Link Publication -
2022
Title Integrated transcriptome and proteome analysis in human brain organoids reveals posttranscriptional regulation of ribosomal genes DOI 10.1101/2022.10.07.511280 Type Preprint Author Sidhaye J Pages 2022.10.07.511280 Link Publication -
2022
Title Human cerebral organoids — a new tool for clinical neurology research DOI 10.1038/s41582-022-00723-9 Type Journal Article Author Eichmüller O Journal Nature Reviews Neurology Pages 661-680 Link Publication -
2022
Title In vitro modeling of the human dopaminergic system Type PhD Thesis Author Daniel Reumann -
2022
Title Morphogenesis and development of human telencephalic organoids in the absence and presence of exogenous ECM DOI 10.1101/2022.12.06.519271 Type Preprint Author Martins-Costa C Pages 2022.12.06.519271 Link Publication -
2024
Title ARID1B controls transcriptional programs of axon projection in an organoid model of the human corpus callosum DOI 10.1016/j.stem.2024.04.014 Type Journal Article Author Martins-Costa C Journal Cell Stem Cell Link Publication -
2024
Title Cerebral organoids display dynamic clonal growth and tunable tissue replenishment DOI 10.1038/s41556-024-01412-z Type Journal Article Author Lindenhofer D Journal Nature Cell Biology Pages 710-718 Link Publication -
2024
Title A polarized FGF8 source specifies frontotemporal signatures in spatially oriented cell populations of cortical assembloids DOI 10.1038/s41592-024-02412-5 Type Journal Article Author Bosone C Journal Nature Methods Pages 2147-2159 Link Publication -
2023
Title Integrated transcriptome and proteome analysis reveals posttranscriptional regulation of ribosomal genes in human brain organoids DOI 10.7554/elife.85135 Type Preprint Author Sidhaye J Link Publication -
2023
Title Morphogenesis and development of human telencephalic organoids in the absence and presence of exogenous extracellular matrix. DOI 10.15252/embj.2022113213 Type Journal Article Author Martins-Costa C Journal The EMBO journal -
2023
Title In vitro modeling of the human dopaminergic system using spatially arranged ventral midbrain–striatum–cortex assembloids DOI 10.1038/s41592-023-02080-x Type Journal Article Author Reumann D Journal Nature Methods Pages 2034-2047 Link Publication
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2025
Title A framework for neural organoids, assembloids and transplantation studies - Knoblich DOI 10.1038/s41586-024-08487-6 Type Contribution to new or improved professional practice -
2024
Link
Title Participation in the International Commission of the Elite Network of Bavaria - Knoblich Type Participation in a guidance/advisory committee Link Link -
2024
Title Advisor of the Howard Hughes Research Institute - Knoblich Type Participation in a guidance/advisory committee
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2023
Title NHM's "Vielfalt kennenlernen: Zellen" Type Participation in an activity, workshop or similar -
2022
Title Lange Nacht der Forschung/Long Night of Research Type A talk or presentation -
2023
Title Health Science Forum Vienna II Type Participation in an activity, workshop or similar -
2022
Title NHM/Deck50: "Vielfalt kennenlernen: Zellen" Type A talk or presentation -
2024
Title UniStem Day 2024 - Knoblich Type Participation in an activity, workshop or similar -
2024
Title Visit of a Korean Delegation of UNIST - Knoblich Type Participation in an activity, workshop or similar -
2022
Title Wiener Kinderuni Type A talk or presentation -
2023
Title Visit of OeAW Vice President Ulrike Diebold at IMBA Type A talk or presentation -
2024
Title Long Night of Research 2024 - Knoblich Type A talk or presentation -
2022
Title Wiener Forschungsfest/Vienna Science Festival Type Participation in an activity, workshop or similar -
2023
Title OeAW Podcasts for IMBA20 Type A broadcast e.g. TV/radio/film/podcast (other than news/press) -
2022
Title Press meeting at IMBA Type A press release, press conference or response to a media enquiry/interview -
2024
Title KILT Day - Knoblich Type A talk or presentation -
2024
Title Business Lunch: Industrie und Spitzenforschung im Dialog - Knoblich Type A talk or presentation -
2022
Title Visit of Heinz Faßmann, President of the Austrian Academy of Sciences Type A talk or presentation -
2025
Title Visit of Lions Club Baden-Helenental - Knoblich Type A talk or presentation -
2022
Title European Researchers' Night Type Participation in an activity, workshop or similar -
2023
Title Organoid workshop Type Participation in an activity, workshop or similar
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2025
Title Conference on Advancements in Organoid Sciences (CAOS) - Knoblich Type Personally asked as a key note speaker to a conference Level of Recognition Continental/International -
2025
Title Leopoldina-Vorlesung - Knoblich Type Personally asked as a key note speaker to a conference Level of Recognition Continental/International -
2025
Title Neural Stem Cells: Capturing Complexity and Plasticity - Knoblich Type Personally asked as a key note speaker to a conference Level of Recognition Continental/International -
2025
Title The First International Organoid Conference - Knoblich Type Personally asked as a key note speaker to a conference Level of Recognition Continental/International -
2025
Title Next-gen organ-on-chips & organoids workshop - Knoblich Type Personally asked as a key note speaker to a conference Level of Recognition Continental/International -
2024
Title Kardinal-Innitzer-Würdigungspreis (Appreciation Prize) - Knoblich Type Research prize Level of Recognition National (any country) -
2024
Title Gordon Research Conference - Knoblich Type Personally asked as a key note speaker to a conference Level of Recognition National (any country) -
2024
Title Cold Spring Harbor Laboratories 3D Modelling Meeting - Knoblich Type Personally asked as a key note speaker to a conference Level of Recognition Continental/International -
2024
Title German Academy of Science Leopoldina, elected Member, 2024 - Knoblich Type Awarded honorary membership, or a fellowship, of a learned society Level of Recognition National (any country) -
2024
Title 2nd International symposium of neurobiology - Knoblich Type Personally asked as a key note speaker to a conference Level of Recognition Continental/International -
2022
Title Invited speaker: Hydra organoid meeting Type Personally asked as a key note speaker to a conference Level of Recognition National (any country) -
2022
Title Workshop on Stem Cells and Their Promise for Regenerative Medicine Type Personally asked as a key note speaker to a conference Level of Recognition Regional (any country) -
2022
Title Invited speaker: Symposium Comparative Medicine 2022 Type Personally asked as a key note speaker to a conference Level of Recognition National (any country) -
2022
Title Invited talk: 2022 International Society for Stem Cell Research (ISSCR) Annual Meeting Type Personally asked as a key note speaker to a conference Level of Recognition Continental/International -
2022
Title Invited speaker: Maintenance and Differentiation of Stem Cells in Development and Disease Type Personally asked as a key note speaker to a conference Level of Recognition National (any country) -
2022
Title Invited speaker: HUMAN CELL ATLAS 2022 GENERAL MEETING Type Personally asked as a key note speaker to a conference Level of Recognition Continental/International -
2022
Title Invited speaker: Development and 3D Modeling of the Human Brain Type Personally asked as a key note speaker to a conference Level of Recognition Continental/International -
2022
Title Invited talk: Gordon conference: Signal Transduction by Engineered Extracellular Matrices Type Personally asked as a key note speaker to a conference Level of Recognition National (any country) -
2022
Title Invited speaker: Pontifical Academy of Sciences Plenary Session 2022 Theme: "Basic science for human development, peace, and planetary health" Type Personally asked as a key note speaker to a conference Level of Recognition National (any country) -
2024
Title 2024 Austrian State Prize for the Promotion of Alternative Methods to Animal Experiments Type Research prize Level of Recognition National (any country) -
2024
Title Centuri Seminar - Knoblich Type Personally asked as a key note speaker to a conference Level of Recognition Continental/International -
2024
Title CHS Symposium - Knoblich Type Personally asked as a key note speaker to a conference Level of Recognition National (any country) -
2024
Title Houskaprize - Knoblich Type Research prize Level of Recognition National (any country) -
2023
Title Keynote: Geist International Science Festival - DAI Heidelberg Type Personally asked as a key note speaker to a conference Level of Recognition National (any country) -
2023
Title Invited speaker: "International Heidelberg Symposium on Stem Cells and Cancer" Type Personally asked as a key note speaker to a conference Level of Recognition National (any country) -
2023
Title Keynote: Functional Genomics of Human Brain Development and Disease Gordon Research Conference Type Personally asked as a key note speaker to a conference Level of Recognition National (any country) -
2023
Title Invited Speaker: PNAS Workshop: Neuro Cognition Type Personally asked as a key note speaker to a conference Level of Recognition National (any country) -
2023
Title Invited speaker: EMBO | EMBL Symposium Organoids: modelling organ development and disease in 3D culture Type Personally asked as a key note speaker to a conference Level of Recognition National (any country) -
2023
Title Keynote: Leopoldina Type Personally asked as a key note speaker to a conference Level of Recognition National (any country) -
2023
Title Keynote: 47. ÖGP / OGTC JAHRESTAGUNG Type Personally asked as a key note speaker to a conference Level of Recognition National (any country) -
2023
Title Invited talk: ISSCR Vienna: Elucidating Principles of Development with Stem Cells Type Personally asked as a key note speaker to a conference Level of Recognition National (any country) -
2023
Title Invited speaker: ReMS Lecture Standford University Type Personally asked as a key note speaker to a conference Level of Recognition National (any country) -
2023
Title Invited speaker: 87th Cold Spring Harbor Laboratory Symposium on Quantitative Biology Type Personally asked as a key note speaker to a conference Level of Recognition Continental/International -
2023
Title Keynote: Stowers Research Conference: Stem Cells, Tissue Plasticity, and Regenerative Biology Type Personally asked as a key note speaker to a conference Level of Recognition National (any country) -
2023
Title Keynote: SY-Stem 2023 Type Personally asked as a key note speaker to a conference Level of Recognition National (any country) -
2022
Title Keynote: Stem cell systems in development, disease and regeneration Type Personally asked as a key note speaker to a conference Level of Recognition Continental/International