Photoacoustic Imaging in Biology and Medicine
Photoacoustic Imaging in Biology and Medicine
Disciplines
Computer Sciences (20%); Mathematics (80%)
Keywords
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Coordination,
Strategic planing,
Administration
Photoacoustic Imaging (PAI) is becoming a major tool for preclinical studies owing to its unique property of combining aspects of optical and ultrasound imaging. Its potential for in-vitro and in-vivo imaging has been demonstrated both in tomographic setups and in photoacoustic microscopy. The proposed research network is represented by an interdisciplinary consortium of experts in photoacoustic imaging in Austria where research in physics and mathematics is heavily driven by input from biology and medicine. The main goal is to steer the technique towards practical applicability and routine for biomedical applications. Thus the NFN aims at developing and characterizing novel physical devices for preclinical inspections based on modern mathematical tools and inversion techniques. Moreover, PAI is considered a new screening technique and novel fields of biomedical applications are identified. Challenging questions in medical applications related to early cancer diagnosis and cancer treatment are of particular interest in the proposed research network, as well as investigations of disease progression in thoroughly controlled small animal studies. This network combines all research areas currently considered to play a significant role in photoacoustics, namely biology, mathematics, medicine, and physics. We believe that such a NFN network, consisting of Austrian research groups with a longstanding research background in the relevant topics, can be competitive. Mutually benefiting from each other we hope to reach a new conceptual and technological level in the research area of biomedical applications in PAI.
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consortium member (01.04.2011 - 31.12.2014)
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consortium member (01.04.2008 - 31.12.2014)
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former consortium member (01.04.2008 - 31.12.2014)
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consortium member (01.04.2008 - 31.12.2014)
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consortium member (01.04.2011 - 31.12.2014)
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consortium member (01.04.2008 - 31.03.2011)
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consortium member (01.04.2011 - 31.12.2014)
- Universität Wien
- Christ Glorieux, Katholieke Universiteit Leuven - Belgium
- Ole Bang, Technical University of Denmark - Denmark
- Peter Kuchment, Texas A&M University - USA
- Leonid Kunyansky, The University of Arizona - USA
- Todd W. Murray, University of Colorado Boulder - USA
- Paul Beard, University College London - United Kingdom
Research Output
- 2631 Citations
- 106 Publications
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2013
Title Cell type and tissue specific function of islet genes in zebrafish pancreas development DOI 10.1016/j.ydbio.2013.03.009 Type Journal Article Author Wilfinger A Journal Developmental Biology Pages 25-37 Link Publication -
2013
Title Free beam Fabry-Perot-interferometer as detector for photoacoustic tomography DOI 10.1117/12.2032964 Type Conference Proceeding Abstract Author Gratt S Pages 880002-880002-4 -
2013
Title Photoacoustic imaging in attenuating acoustic media based on strongly causal models DOI 10.1002/mma.2756 Type Journal Article Author Kalimeris K Journal Mathematical Methods in the Applied Sciences Pages 2254-2264 Link Publication -
2013
Title Simultaneous three-dimensional photoacoustic and laser-ultrasound tomography DOI 10.1364/boe.4.001380 Type Journal Article Author Wurzinger G Journal Biomedical Optics Express Pages 1380-9 Link Publication -
2013
Title Optical Flow on Evolving Surfaces with an Application to the Analysis of 4D Microscopy Data DOI 10.1007/978-3-642-38267-3_21 Type Book Chapter Author Kirisits C Publisher Springer Nature Pages 246-257 -
2013
Title Iterative reconstruction method for photoacoustic section imaging with integrating cylindrical detectors DOI 10.1117/12.2007902 Type Conference Proceeding Abstract Author Paltauf G -
2013
Title Hybrid photoacoustic and ultrasound section imaging with optical ultrasound detection DOI 10.1002/jbio.201200223 Type Journal Article Author Nuster R Journal Journal of Biophotonics Pages 549-559 -
2013
Title Remote photoacoustic imaging on non-flat surfaces and appropriate reconstruction algorithms DOI 10.1117/12.2003566 Type Conference Proceeding Abstract Author Berer T Pages 858134-858134-9 -
2013
Title A webcam in Bayer-mode as a light beam profiler for the near infra-red DOI 10.1016/j.optlaseng.2012.12.010 Type Journal Article Author Langer G Journal Optics and Lasers in Engineering Pages 571-575 Link Publication -
2013
Title Quasi-balanced two-wave mixing interferometer for remote ultrasound detection DOI 10.1080/09500340.2013.837981 Type Journal Article Author Hochreiner A Journal Journal of Modern Optics Pages 1327-1331 Link Publication -
2013
Title Ultraschall aus Licht DOI 10.1002/piuz.201301333 Type Journal Article Author Paltauf G Journal Physik in unserer Zeit Pages 244-250 -
2013
Title Dual-modality section imaging system with optical ultrasound detection for photoacoustic and ultrasound imaging DOI 10.1117/12.2006173 Type Conference Proceeding Abstract Author Nuster R -
2013
Title In vivo three dimensional dual wavelength photoacoustic tomography imaging of the far red fluorescent protein E2-Crimson expressed in adult zebrafish. DOI 10.1364/boe.4.001846 Type Journal Article Author Liu M Journal Biomedical optics express Pages 1846-55 Link Publication -
2013
Title Non-contact photoacoustic imaging using a fiber based interferometer with optical amplification. DOI 10.1364/boe.4.002322 Type Journal Article Author Hochreiner A Journal Biomedical optics express Pages 2322-31 Link Publication -
2013
Title Arbeitsgemeinschaft: Ergodic Theory and Combinatorial Number Theory DOI 10.4171/owr/2012/51 Type Journal Article Author Ammari H Journal Oberwolfach Reports Pages 3061-3127 -
2013
Title Two-photon absorption-induced photoacoustic imaging of Rhodamine B dyed polyethylene spheres using a femtosecond laser. DOI 10.1364/oe.21.022410 Type Journal Article Author Langer G Journal Optics express Pages 22410-22 Link Publication -
2012
Title Real-time photoacoustic imaging with optical ultrasound detection DOI 10.1117/12.910195 Type Conference Proceeding Abstract Author Nuster R -
2012
Title Local analysis of inverse problems: Hölder stability and iterative reconstruction DOI 10.1088/0266-5611/28/4/045001 Type Journal Article Author De Hoop M Journal Inverse Problems Pages 045001 Link Publication -
2012
Title Photoacoustic imaging using an adaptive interferometer with a photorefractive crystal DOI 10.1002/jbio.201100111 Type Journal Article Author Hochreiner A Journal Journal of Biophotonics Pages 508-517 -
2017
Title ptf1a+, ela3l- cells are developmentally maintained progenitors for exocrine regeneration following extreme loss of acinar cells in zebrafish larvae DOI 10.1242/dmm.026633 Type Journal Article Author Schmitner N Journal Disease Models & Mechanisms Pages 307-321 Link Publication -
2017
Title Piezoelectric line detector array for photoacoustic tomography DOI 10.1016/j.pacs.2017.09.002 Type Journal Article Author Paltauf G Journal Photoacoustics Pages 28-36 Link Publication -
2016
Title Combined photoacoustic, pulse-echo laser ultrasound, and speed-of-sound imaging using integrating optical detection DOI 10.1117/1.jbo.21.8.086010 Type Journal Article Author Wurzinger G Journal Journal of Biomedical Optics Pages 086010-086010 Link Publication -
2015
Title Thermodynamic Limits of Spatial Resolution in Active Thermography DOI 10.1007/s10765-015-1890-7 Type Journal Article Author Burgholzer P Journal International Journal of Thermophysics Pages 2328-2341 Link Publication -
2015
Title Stability in the linearized problem of quantitative elastography DOI 10.1088/0266-5611/31/3/035005 Type Journal Article Author Widlak T Journal Inverse Problems Pages 035005 Link Publication -
2008
Title Optimizing image resolution in three-dimensional photoacoustic tomography with line detectors DOI 10.1117/12.763161 Type Conference Proceeding Abstract Author Paltauf G Pages 685621-685621-10 -
2008
Title Sparse regularization with lq penalty term DOI 10.1088/0266-5611/24/5/055020 Type Journal Article Author Grasmair M Journal Inverse Problems Pages 055020 Link Publication -
2008
Title Circular integrating detectors in photo and thermoacoustic tomography DOI 10.1080/17415970802166782 Type Journal Article Author Zangerl G Journal Inverse Problems in Science and Engineering Pages 133-142 -
2012
Title Characterization and regulation of the hb9/mnx1 beta-cell progenitor specific enhancer in zebrafish DOI 10.1016/j.ydbio.2012.03.001 Type Journal Article Author Arkhipova V Journal Developmental Biology Pages 290-302 Link Publication -
2012
Title Hybrid tomography for conductivity imaging DOI 10.1088/0266-5611/28/8/084008 Type Journal Article Author Widlak T Journal Inverse Problems Pages 084008 Link Publication -
2012
Title Acoustic reflector combined with optical detection for photoacoustic section imaging DOI 10.1117/12.908252 Type Conference Proceeding Abstract Author Nuster R -
2012
Title Reconstruction formulas for photoacoustic sectional imaging DOI 10.1088/0266-5611/28/4/045004 Type Journal Article Author Elbau P Journal Inverse Problems Pages 045004 Link Publication -
2012
Title Simultaneous Reconstructions of Absorption Density and Wave Speed with Photoacoustic Measurements DOI 10.1137/110849055 Type Journal Article Author Kirsch A Journal SIAM Journal on Applied Mathematics Pages 1508-1523 Link Publication -
2012
Title Imaging from coupled physics DOI 10.1088/0266-5611/28/8/080201 Type Journal Article Author Arridge S Journal Inverse Problems Pages 080201 Link Publication -
2012
Title Optical detection of photoacoustic waves using phase sensitive low-coherence interferometry DOI 10.1117/12.908325 Type Conference Proceeding Abstract Author Hermann B Pages 822338-822338-5 -
2011
Title Fiber-based broadband ultrasound detector for photoacoustic imaging DOI 10.1117/12.884647 Type Conference Proceeding Abstract Author Grün H -
2011
Title Multimodal photoacoustic and optical coherence tomography scanner using an all optical detection scheme for 3D morphological skin imaging DOI 10.1364/boe.2.002202 Type Journal Article Author Zhang E Journal Biomedical Optics Express Pages 2202-2215 Link Publication -
2011
Title 3D optical coherence tomography for clinical diagnosis of nonmelanoma skin cancers DOI 10.2217/iim.11.62 Type Journal Article Author Alex A Journal Imaging in Medicine Pages 653-674 -
2011
Title Attenuation Models in Photoacoustics DOI 10.1007/978-3-642-22990-9_4 Type Book Chapter Author Kowar R Publisher Springer Nature Pages 85-130 -
2011
Title Photoacoustic tomography of ex vivo mouse hearts with myocardial infarction DOI 10.1117/1.3556720 Type Journal Article Author Holotta M Journal Journal of Biomedical Optics Pages 036007-036007-5 Link Publication -
2011
Title On the use of frequency-domain reconstruction algorithms for photoacoustic imaging DOI 10.1117/1.3605696 Type Journal Article Author Schulze R Journal Journal of Biomedical Optics Pages 086002-086002-6 Link Publication -
2011
Title Integrating Detectors for Photoacoustic Imaging DOI 10.5772/25115 Type Book Chapter Author Gru¨N H Publisher IntechOpen Link Publication -
2011
Title Piezoelectric annular array for large depth of field photoacoustic imaging DOI 10.1364/boe.2.002655 Type Journal Article Author Passler K Journal Biomedical Optics Express Pages 2655-2664 Link Publication -
2011
Title Photoacoustic tomography with integrating fiber-based annular detectors DOI 10.1117/12.877980 Type Conference Proceeding Abstract Author Grün H -
2014
Title Quantitative Photoacoustic Tomography with Piecewise Constant Material Parameters DOI 10.1137/140959705 Type Journal Article Author Naetar W Journal SIAM Journal on Imaging Sciences Pages 1755-1774 -
2013
Title Low-cost parallelization of optical fiber based detectors for photoacoustic imaging DOI 10.1117/12.2002034 Type Conference Proceeding Abstract Author Bauer-Marschallinger J -
2013
Title Limits of Spatial Resolution for Thermography and Other Non-destructive Imaging Methods Based on Diffusion Waves DOI 10.1007/s10765-013-1513-0 Type Journal Article Author Burgholzer P Journal International Journal of Thermophysics Pages 1617-1632 Link Publication -
2013
Title Simultaneous three-dimensional laser-ultrasound and photoacoustic imaging DOI 10.1117/12.2032959 Type Conference Proceeding Abstract Author Wurzinger G Pages 880005-880005-5 -
2013
Title The Levenberg–Marquardt iteration for numerical inversion of the power density operator DOI 10.1515/jip-2012-0091 Type Journal Article Author Bal G Journal jiip Pages 265-280 Link Publication -
2013
Title Deconvolution algorithms for photoacoustic tomography to reduce blurring caused by finite sized detectors DOI 10.1117/12.2003889 Type Conference Proceeding Abstract Author Burgholzer P Pages 858137-858137-11 -
2011
Title Photoacoustic section imaging with an integrating cylindrical detector DOI 10.1117/12.889703 Type Conference Proceeding Abstract Author Gratt S -
2011
Title Photoacoustic section imaging with an integrating cylindrical detector DOI 10.1364/boe.2.002973 Type Journal Article Author Gratt S Journal Biomedical Optics Express Pages 2973-2981 Link Publication -
2011
Title Annular piezoelectric ring array for photoacoustic imaging DOI 10.1117/12.889707 Type Conference Proceeding Abstract Author Passler K Pages 809012-809012-7 -
2011
Title Downstream Fabry-Perot interferometer for acoustic wave monitoring in photoacoustic tomography. DOI 10.1364/ol.36.000981 Type Journal Article Author Nuster R Journal Optics letters Pages 981-3 -
2011
Title Handbook of Mathematical Methods in Imaging DOI 10.1007/978-0-387-92920-0 Type Book Publisher Springer Nature -
2011
Title Compensation of Ultrasound Attenuation in Photoacoustic Imaging DOI 10.5772/19815 Type Book Chapter Author Burgholzer P Publisher IntechOpen Link Publication -
2011
Title The residual method for regularizing ill-posed problems DOI 10.1016/j.amc.2011.08.009 Type Journal Article Author Grasmair M Journal Applied Mathematics and Computation Pages 2693-2710 Link Publication -
2011
Title Remote photoacoustic imaging for material inspection DOI 10.1088/1742-6596/278/1/012034 Type Journal Article Author Berer T Journal Journal of Physics: Conference Series Pages 012034 Link Publication -
2011
Title Multimodal optical coherence/photoacoustic tomography of skin DOI 10.1117/12.875499 Type Conference Proceeding Abstract Author Alex A Pages 788916-788916-6 -
2011
Title Ultrasonic attenuation of biomaterials for compensation in photoacoustic imaging DOI 10.1117/12.874663 Type Conference Proceeding Abstract Author Bauer-Marschallinger J Pages 789931-789931-9 -
2011
Title Non-Local Functionals for Imaging DOI 10.1007/978-1-4419-9569-8_8 Type Book Chapter Author Boulanger J Publisher Springer Nature Pages 131-154 -
2011
Title Convergence of variational regularization methods for imaging on Riemannian manifolds DOI 10.1088/0266-5611/28/1/015007 Type Journal Article Author Thorstensen N Journal Inverse Problems Pages 015007 Link Publication -
2011
Title Operating point stabilization of fiber-based line detectors for photoacoustic imaging DOI 10.1117/12.889097 Type Conference Proceeding Abstract Author Felbermayer K Pages 809011-809011-8 -
2010
Title Using a phase contrast imaging method in photoacoustic tomography DOI 10.1117/12.842348 Type Conference Proceeding Abstract Author Nuster R -
2010
Title Scanning acoustic-photoacoustic microscopy using axicon transducers DOI 10.1364/boe.1.000318/ Type Journal Article Author Passler K Journal Biomedical Optics Express Pages 318-323 -
2010
Title Photoacoustic microtomography using optical interferometric detection DOI 10.1117/1.3333547 Type Journal Article Author Nuster R Journal Journal of Biomedical Optics Pages 021307-021307-6 Link Publication -
2010
Title Photoacoustic microtomography: system characterization and first results on biological specimens DOI 10.1117/12.842039 Type Conference Proceeding Abstract Author Paltauf G -
2010
Title Discretization of variational regularization in Banach spaces DOI 10.1088/0266-5611/26/10/105017 Type Journal Article Author Pöschl C Journal Inverse Problems Pages 105017 Link Publication -
2010
Title Exact reconstruction in photoacoustic tomography with circular integrating detectors II: Spherical geometry DOI 10.1002/mma.1266 Type Journal Article Author Zangerl G Journal Mathematical Methods in the Applied Sciences Pages 1771-1782 -
2010
Title Efficient modeling and compensation of ultrasound attenuation losses in photoacoustic imaging DOI 10.1088/0266-5611/27/1/015003 Type Journal Article Author Roitner H Journal Inverse Problems Pages 015003 -
2012
Title Characterization of broadband fiber optic line detectors for photoacoustic tomography DOI 10.1002/jbio.201100110 Type Journal Article Author Berer T Journal Journal of Biophotonics Pages 518-528 -
2012
Title Single mode polymer fiber line detector for photoacoustic tomography DOI 10.1117/12.908313 Type Conference Proceeding Abstract Author Grün H Pages 822337-822337-5 -
2012
Title Experimental evaluation of time domain models for ultrasound attenuation losses in photoacoustic imaging DOI 10.1121/1.3699194 Type Journal Article Author Roitner H Journal The Journal of the Acoustical Society of America Pages 3763-3774 -
2012
Title Broadband High-Frequency Measurement of Ultrasonic Attenuation of Tissues and Liquids DOI 10.1109/tuffc.2012.2504 Type Journal Article Author Bauer-Marschallinger J Journal IEEE Transactions on Ultrasonics, Ferroelectrics and Frequency Control Pages 2631-2645 -
2012
Title Numerical and analytical modeling of optical fibers for ultrasound detection DOI 10.1109/ultsym.2011.0125 Type Conference Proceeding Abstract Author Veres I Pages 520-523 -
2012
Title Dual Mode Photoacoustic/Acoustic Microscopy with Optical Generation and Detection DOI 10.1109/ultsym.2012.0356 Type Conference Proceeding Abstract Author Berer T Pages 1-4 -
2012
Title Spatial resolution and sensitivity in photoacoustic tomography taking noise into account: from point-like detectors to large integrating detectors DOI 10.1117/12.908451 Type Conference Proceeding Abstract Author Burgholzer P Pages 822321-822321-8 -
2012
Title Contactless photoacoustic imaging of biological samples DOI 10.1117/12.908483 Type Conference Proceeding Abstract Author Berer T -
2012
Title Reconstruction Algorithms for Remote Photoacoustic Imaging DOI 10.1109/ultsym.2012.0579 Type Conference Proceeding Abstract Author Berer T Pages 1-4 -
2009
Title Weight factors for limited angle photoacoustic tomography DOI 10.1088/0031-9155/54/11/002 Type Journal Article Author Paltauf G Journal Physics in Medicine & Biology Pages 3303-3314 Link Publication -
2009
Title Comparison of optical and piezoelectric integrating line detectors DOI 10.1117/12.808873 Type Conference Proceeding Abstract Author Nuster R -
2009
Title Sparsity Regularization for Radon Measures DOI 10.1007/978-3-642-02256-2_38 Type Book Chapter Author Scherzer O Publisher Springer Nature Pages 452-463 -
2009
Title Photoacoustic imaging with limited diffraction beam transducers DOI 10.1117/12.808217 Type Conference Proceeding Abstract Author Paltauf G -
2009
Title Fiber-based detectors for photoacoustic imaging DOI 10.1117/12.831739 Type Conference Proceeding Abstract Author Grün H -
2009
Title Information changes and time reversal for diffusion-related periodic fields DOI 10.1117/12.809074 Type Conference Proceeding Abstract Author Burgholzer P Pages 717723-717723-11 -
2009
Title Characterization of integrating ultrasound detectors for photoacoustic tomography DOI 10.1063/1.3116133 Type Journal Article Author Paltauf G Journal Journal of Applied Physics Pages 102026 -
2009
Title On regularization methods of EM-Kaczmarz type DOI 10.1088/0266-5611/25/7/075008 Type Journal Article Author Haltmeier M Journal Inverse Problems Pages 075008 Link Publication -
2009
Title Photoacoustic imaging using a conical axicon detector DOI 10.1117/12.831728 Type Conference Proceeding Abstract Author Gratt S -
2009
Title Variational Methods in Imaging DOI 10.1007/978-0-387-69277-7 Type Book Author Scherzer O Publisher Springer Nature -
2009
Title Photoacoustic imaging with integrating line detectors DOI 10.1117/12.811009 Type Conference Proceeding Abstract Author Grün H -
2008
Title Impedance-Acoustic Tomography DOI 10.1137/080715123 Type Journal Article Author Gebauer B Journal SIAM Journal on Applied Mathematics Pages 565-576 -
2008
Title Photoacoustic tomography of heterogeneous media using a model-based time reversal method DOI 10.1117/12.763111 Type Conference Proceeding Abstract Author Grün H Pages 685620-685620-9 -
2010
Title Necessary and sufficient conditions for linear convergence of l1-regularization DOI 10.1002/cpa.20350 Type Journal Article Author Grasmair M Journal Communications on Pure and Applied Mathematics Pages 161-182 -
2010
Title Remote photoacoustic imaging on solid material using a two-wave mixing interferometer. DOI 10.1364/ol.35.004151 Type Journal Article Author Berer T Journal Optics letters Pages 4151-3 -
2010
Title Photoacoustic tomography of pathological tissue in ex-vivo mouse hearts DOI 10.1117/12.842032 Type Conference Proceeding Abstract Author Holotta M -
2010
Title A variational setting for volume constrained image registration DOI 10.3934/ipi.2010.4.505 Type Journal Article Author Pöschl C Journal Inverse Problems and Imaging Pages 505-522 -
2010
Title Sparsity in Inverse Geophysical Problems DOI 10.1007/978-3-642-01546-5_25 Type Book Chapter Author Grasmair M Publisher Springer Nature Pages 763-784 -
2010
Title Full field detection in photoacoustic tomography. DOI 10.1364/oe.18.006288 Type Journal Article Author Nuster R Journal Optics express Pages 6288-99 Link Publication -
2010
Title Causality analysis of frequency-dependent wave attenuation DOI 10.1002/mma.1344 Type Journal Article Author Kowar R Journal Mathematical Methods in the Applied Sciences Pages 108-124 Link Publication -
2010
Title Three-dimensional photoacoustic imaging using fiber-based line detectors DOI 10.1117/1.3381186 Type Journal Article Author Grün H Journal Journal of Biomedical Optics Pages 021306-021306-8 Link Publication -
2010
Title Photoacoustic tomography using integrating line detectors DOI 10.1088/1742-6596/214/1/012009 Type Journal Article Author Burgholzer P Journal Journal of Physics: Conference Series Pages 012009 Link Publication -
2010
Title Spatial resolution in photoacoustic tomography: effects of detector size and detector bandwidth DOI 10.1088/0266-5611/26/12/125002 Type Journal Article Author Haltmeier M Journal Inverse Problems Pages 125002 -
2010
Title Image reconstruction in photoacoustic tomography using integrating detectors accounting for frequency-dependent attenuation DOI 10.1117/12.843220 Type Conference Proceeding Abstract Author Burgholzer P -
2009
Title Photoacoustic generation of X-waves and their application in a dual mode scanning acoustic microscope DOI 10.1117/12.831745 Type Conference Proceeding Abstract Author Passler K -
2009
Title Experimental determination of frequency dependent acoustic attenuation for photoacoustic imaging DOI 10.1117/12.831763 Type Conference Proceeding Abstract Author Bauer-Marschallinger J -
2009
Title Photoacoustic microscopy with large integrating optical annular detectors DOI 10.1117/12.831737 Type Conference Proceeding Abstract Author Berer T -
2009
Title A Reconstruction Algorithm for Photoacoustic Imaging Based on the Nonuniform FFT DOI 10.1109/tmi.2009.2022623 Type Journal Article Author Haltmeier M Journal IEEE Transactions on Medical Imaging Pages 1727-1735 Link Publication