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Photoacoustic Imaging in Biology and Medicine

Photoacoustic Imaging in Biology and Medicine

Otmar Scherzer (ORCID: 0000-0001-9378-7452)
  • Grant DOI 10.55776/S105
  • Funding program National Research Networks
  • Status ended
  • Start April 1, 2008
  • End December 31, 2014
  • Funding amount € 3,023,018
  • Project website
  • E-mail

Disciplines

Computer Sciences (20%); Mathematics (80%)

Keywords

    Coordination, Strategic planing, Administration

Abstract

Photoacoustic Imaging (PAI) is becoming a major tool for preclinical studies owing to its unique property of combining aspects of optical and ultrasound imaging. Its potential for in-vitro and in-vivo imaging has been demonstrated both in tomographic setups and in photoacoustic microscopy. The proposed research network is represented by an interdisciplinary consortium of experts in photoacoustic imaging in Austria where research in physics and mathematics is heavily driven by input from biology and medicine. The main goal is to steer the technique towards practical applicability and routine for biomedical applications. Thus the NFN aims at developing and characterizing novel physical devices for preclinical inspections based on modern mathematical tools and inversion techniques. Moreover, PAI is considered a new screening technique and novel fields of biomedical applications are identified. Challenging questions in medical applications related to early cancer diagnosis and cancer treatment are of particular interest in the proposed research network, as well as investigations of disease progression in thoroughly controlled small animal studies. This network combines all research areas currently considered to play a significant role in photoacoustics, namely biology, mathematics, medicine, and physics. We believe that such a NFN network, consisting of Austrian research groups with a longstanding research background in the relevant topics, can be competitive. Mutually benefiting from each other we hope to reach a new conceptual and technological level in the research area of biomedical applications in PAI.

Consortium
  • Dirk Meyer, Universität Innsbruck
    consortium member (01.04.2011 - 31.12.2014)
  • Günther Paltauf, Universität Graz
    consortium member (01.04.2008 - 31.12.2014)
  • Otmar Scherzer, Universität Wien
    consortium member (01.04.2008 - 31.12.2014)
  • Peter Burgholzer, Research Center for Non Destructive Testing GmbH
    consortium member (01.04.2008 - 31.12.2014)
  • Robert Nuster, Universität Graz
    consortium member (01.04.2011 - 31.12.2014)
  • Werner Jaschke, Medizinische Universität Innsbruck
    consortium member (01.04.2008 - 31.03.2011)
  • Wolfgang Drexler, Medizinische Universität Wien
    consortium member (01.04.2011 - 31.12.2014)
Research institution(s)
  • Universität Wien
International project participants
  • Christ Glorieux, Katholieke Universiteit Leuven - Belgium
  • Ole Bang, Technical University of Denmark - Denmark
  • Peter Kuchment, Texas A&M University - USA
  • Leonid Kunyansky, The University of Arizona - USA
  • Todd W. Murray, University of Colorado Boulder - USA
  • Paul Beard, University College London - United Kingdom

Research Output

  • 562 Citations
  • 29 Publications
Publications
  • 2017
    Title ptf1a+, ela3l- cells are developmentally maintained progenitors for exocrine regeneration following extreme loss of acinar cells in zebrafish larvae
    DOI 10.1242/dmm.026633
    Type Journal Article
    Author Schmitner N
    Journal Disease Models & Mechanisms
    Pages 307-321
    Link Publication
  • 2013
    Title Non-contact photoacoustic imaging using a fiber based interferometer with optical amplification.
    DOI 10.1364/boe.4.002322
    Type Journal Article
    Author Hochreiner A
    Journal Biomedical optics express
    Pages 2322-31
    Link Publication
  • 2013
    Title Low-cost parallelization of optical fiber based detectors for photoacoustic imaging
    DOI 10.1117/12.2002034
    Type Conference Proceeding Abstract
    Author Bauer-Marschallinger J
  • 2013
    Title Cell type and tissue specific function of islet genes in zebrafish pancreas development
    DOI 10.1016/j.ydbio.2013.03.009
    Type Journal Article
    Author Wilfinger A
    Journal Developmental Biology
    Pages 25-37
    Link Publication
  • 2013
    Title Deconvolution algorithms for photoacoustic tomography to reduce blurring caused by finite sized detectors
    DOI 10.1117/12.2003889
    Type Conference Proceeding Abstract
    Author Burgholzer P
    Pages 858137-858137-11
  • 2010
    Title Three-dimensional photoacoustic imaging using fiber-based line detectors
    DOI 10.1117/1.3381186
    Type Journal Article
    Author Grün H
    Journal Journal of Biomedical Optics
    Pages 021306-021306-8
    Link Publication
  • 2010
    Title Scanning acoustic-photoacoustic microscopy using axicon transducers
    DOI 10.1364/boe.1.000318/
    Type Journal Article
    Author Passler K
    Journal Biomedical Optics Express
    Pages 318-323
  • 2009
    Title On regularization methods of EM-Kaczmarz type
    DOI 10.1088/0266-5611/25/7/075008
    Type Journal Article
    Author Haltmeier M
    Journal Inverse Problems
    Pages 075008
    Link Publication
  • 2009
    Title Characterization of integrating ultrasound detectors for photoacoustic tomography
    DOI 10.1063/1.3116133
    Type Journal Article
    Author Paltauf G
    Journal Journal of Applied Physics
    Pages 102026
  • 2008
    Title Circular integrating detectors in photo and thermoacoustic tomography
    DOI 10.1080/17415970802166782
    Type Journal Article
    Author Zangerl G
    Journal Inverse Problems in Science and Engineering
    Pages 133-142
  • 2016
    Title Combined photoacoustic, pulse-echo laser ultrasound, and speed-of-sound imaging using integrating optical detection
    DOI 10.1117/1.jbo.21.8.086010
    Type Journal Article
    Author Wurzinger G
    Journal Journal of Biomedical Optics
    Pages 086010-086010
    Link Publication
  • 2012
    Title Characterization and regulation of the hb9/mnx1 beta-cell progenitor specific enhancer in zebrafish
    DOI 10.1016/j.ydbio.2012.03.001
    Type Journal Article
    Author Arkhipova V
    Journal Developmental Biology
    Pages 290-302
    Link Publication
  • 2012
    Title Broadband High-Frequency Measurement of Ultrasonic Attenuation of Tissues and Liquids
    DOI 10.1109/tuffc.2012.2504
    Type Journal Article
    Author Bauer-Marschallinger J
    Journal IEEE Transactions on Ultrasonics, Ferroelectrics and Frequency Control
    Pages 2631-2645
  • 2012
    Title Dual Mode Photoacoustic/Acoustic Microscopy with Optical Generation and Detection
    DOI 10.1109/ultsym.2012.0356
    Type Conference Proceeding Abstract
    Author Berer T
    Pages 1-4
  • 2012
    Title Experimental evaluation of time domain models for ultrasound attenuation losses in photoacoustic imaging
    DOI 10.1121/1.3699194
    Type Journal Article
    Author Roitner H
    Journal The Journal of the Acoustical Society of America
    Pages 3763-3774
  • 2012
    Title Numerical and analytical modeling of optical fibers for ultrasound detection
    DOI 10.1109/ultsym.2011.0125
    Type Conference Proceeding Abstract
    Author Veres I
    Pages 520-523
  • 2013
    Title Quasi-balanced two-wave mixing interferometer for remote ultrasound detection
    DOI 10.1080/09500340.2013.837981
    Type Journal Article
    Author Hochreiner A
    Journal Journal of Modern Optics
    Pages 1327-1331
    Link Publication
  • 2012
    Title Single mode polymer fiber line detector for photoacoustic tomography
    DOI 10.1117/12.908313
    Type Conference Proceeding Abstract
    Author Grün H
    Pages 822337-822337-5
  • 2012
    Title Characterization of broadband fiber optic line detectors for photoacoustic tomography
    DOI 10.1002/jbio.201100110
    Type Journal Article
    Author Berer T
    Journal Journal of Biophotonics
    Pages 518-528
  • 2011
    Title Piezoelectric annular array for large depth of field photoacoustic imaging
    DOI 10.1364/boe.2.002655
    Type Journal Article
    Author Passler K
    Journal Biomedical Optics Express
    Pages 2655-2664
    Link Publication
  • 2011
    Title Fiber-based broadband ultrasound detector for photoacoustic imaging
    DOI 10.1117/12.884647
    Type Conference Proceeding Abstract
    Author Grün H
  • 2011
    Title On the use of frequency-domain reconstruction algorithms for photoacoustic imaging
    DOI 10.1117/1.3605696
    Type Journal Article
    Author Schulze R
    Journal Journal of Biomedical Optics
    Pages 086002-086002-6
    Link Publication
  • 2011
    Title Compensation of Ultrasound Attenuation in Photoacoustic Imaging
    DOI 10.5772/19815
    Type Book Chapter
    Author Burgholzer P
    Publisher IntechOpen
    Link Publication
  • 2011
    Title Annular piezoelectric ring array for photoacoustic imaging
    DOI 10.1117/12.889707
    Type Conference Proceeding Abstract
    Author Passler K
    Pages 809012-809012-7
  • 2011
    Title Ultrasonic attenuation of biomaterials for compensation in photoacoustic imaging
    DOI 10.1117/12.874663
    Type Conference Proceeding Abstract
    Author Bauer-Marschallinger J
    Pages 789931-789931-9
  • 2011
    Title Photoacoustic section imaging with an integrating cylindrical detector
    DOI 10.1364/boe.2.002973
    Type Journal Article
    Author Gratt S
    Journal Biomedical Optics Express
    Pages 2973-2981
    Link Publication
  • 2011
    Title Photoacoustic tomography with integrating fiber-based annular detectors
    DOI 10.1117/12.877980
    Type Conference Proceeding Abstract
    Author Grün H
  • 2010
    Title Discretization of variational regularization in Banach spaces
    DOI 10.1088/0266-5611/26/10/105017
    Type Journal Article
    Author Pöschl C
    Journal Inverse Problems
    Pages 105017
    Link Publication
  • 2013
    Title Limits of Spatial Resolution for Thermography and Other Non-destructive Imaging Methods Based on Diffusion Waves
    DOI 10.1007/s10765-013-1513-0
    Type Journal Article
    Author Burgholzer P
    Journal International Journal of Thermophysics
    Pages 1617-1632
    Link Publication

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