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Molecular Bioanalytics: From molecular recognition to membrane transport (MoBA)

Molecular Bioanalytics: From molecular recognition to membrane transport (MoBA)

Peter Pohl (ORCID: 0000-0002-1792-2314)
  • Grant DOI 10.55776/W1201
  • Funding program Doctoral Programs
  • Status ended
  • Start March 1, 2006
  • End December 31, 2010
  • Funding amount € 1,526,962

Disciplines

Biology (100%)

Abstract

The interdisciplinary graduate research programme involves the Institutes of Biophysics, of Analytical Chemistry, of Applied Physics, of Organic Chemistry, and of Theoretical Physics from the Johannes-Kepler-University Linz (JKU), the Johann Radon Institute for Computational and Applied Mathematics from the Austrian Academy of Sciences, and the Upper Austrian Research. It is designed to span the gap between the processes of molecular recognition and of molecular membrane transport. The first part is complementary to the GENAU-research network at the JKU "Ultra-sensitive proteomics and genomics", whereas the second part is generated by a long tradition of membrane transport research at the JKU. The scientific goal of the graduate programme is to gain insight into the molecular picture (1) of how molecules are recognised on the membrane surface and (2) of how they are conveyed across membrane proteins. The investigations of carriers (sodium-glucose transporter), nuclear pores, as well as water and ion channels (AQPs and TRP-channels) involved in molecular recognition and membrane transport are going to profit from the development of new bioanalytical methods (thin piezo-electrical film transducers, cell- microarrays, molecular imprinted polymers, high-throughput multi-parameter microscopy). Well established analytical techniques with a resolution covering the whole scale from single molecules to molecular ensembles provide a solid basis for the Molecular Bioanalytics (MoBA) programme. The latter is part of the interdisciplinary priority network "BioSystem Analysis" at the JKU and is designed to provide Austrian and international students with excellent opportunities for multi-disciplinary studies at the edge between physics, medicine, biology and chemistry. Its curriculum comprises a series of lectures in Single Molecule Techniques, in Bioanalysis of Molecular Ensembles and in Biomolecular Techniques which is supplemented by practical courses. In addition, the students will have the opportunity to attend rhetoric courses, courses in presentation techniques and knowledge transfer. The guidelines of the programme include participation in the annual "Single Molecules" workshop held in Linz and a yearly meeting (Summer school) between the student and the entire faculty. Funding by the programme enables Ph.D. students (i) to attend national and international conferences and (ii) to spend one semester in a foreign laboratory. Combined with research at the frontiers of life science, the programme will be applicable to many scientific and technological fields related to biophysics, applied physics, bioorganic chemistry, structural and molecular biology, mathematical modelling, and scientific computing giving the Ph.D. student lifelong flexibility for continued professional growth.

Consortium
  • Peter Pohl, Universität Linz
    consortium member (01.03.2006 - 31.12.2010)
Research institution(s)
  • Österreichische Akademie der Wissenschaften
  • CBL GmbH
  • Universität Linz
Project participants
  • Heinz Engl, Universität Wien , associated research partner
  • Wolfgang Buchberger, Universität Linz , associated research partner
  • Urbaan M. Titulaer, Universität Linz , associated research partner
  • Sapar Saparov, Universität Linz , associated research partner
  • Peter Pohl, Universität Linz , associated research partner
  • Norbert Müller, Universität Linz , associated research partner
  • Johannes Heitz, Universität Linz , associated research partner
  • Johannes David Pedarnig, Universität Linz , associated research partner
  • Christoph Romanin, Universität Linz , associated research partner
  • Gerhard J. Schütz, Technische Universität Wien , associated research partner
  • Alois Sonnleitner, CBL GmbH , associated research partner
  • Peter Hinterdorfer, Universität Linz , associated research partner
International project participants
  • Gottfried Otting, ANU - Australian National University - Australia
  • Vaclav Svorcik, University of Chemistry and Technology Prague - Czechia
  • Natalia Prevarskaya, Université de Lille - France
  • Helmut Grubmüller, Max-Planck-Institut für Biophysikalische Chemie - Germany
  • Boris Mizaikoff, Universität Ulm - Germany
  • Dietmar Knopp, Technische Universität München - Germany
  • Rolf Kinne, Max-Planck-Gesellschaft - Germany
  • Klaus Fendler, Max-Planck-Gesellschaft - Germany
  • Claus Hultschig, Max-Planck-Gesellschaft - Germany
  • Walter Rosenthal, Helmholtz-Gemeinschaft Deutscher Forschungszentren - Germany
  • Michael Schaefer, Freie Universität Berlin - Germany
  • Klaus Albert, Eberhard-Karls-Universität Tübingen - Germany
  • Laszlo Vigh, University of Szeged - Hungary
  • Ziv Reich, Weizmann Institute of Science - Israel
  • Vincenzo Capasso, University of Milan - Italy
  • Ivano Bertini, Università degli Studi di Firenze - Italy
  • Matthias A. Hediger, University of Bern - Switzerland
  • Mark Zeidel, University of Pittsburgh - USA
  • John Cherian Mathai, University of Pittsburgh - USA
  • Stanley Osher, University of California at Los Angeles - USA
  • Robert S. Eisenberg, Rush University Medical Center - USA
  • Peter Agre, Duke Medical Center - USA
  • Rüdiger H. Ettrich, Larkin University - USA
  • Evan Evans, Boston University - USA
  • Nikolai M. Soldatov, National Institutes of Health - USA
  • Philip M. Williams, Nottingham University
  • Alexander M. Seifalian, University College London

Research Output

  • 1307 Citations
  • 18 Publications
Publications
  • 2016
    Title New avenues for matter-wave-enhanced spectroscopy
    DOI 10.1007/s00340-016-6573-y
    Type Journal Article
    Author Rodewald J
    Journal Applied Physics B
    Pages 3
    Link Publication
  • 2011
    Title Monitoring Single-channel Water Permeability in Polarized Cells*
    DOI 10.1074/jbc.m111.291864
    Type Journal Article
    Author Erokhova L
    Journal Journal of Biological Chemistry
    Pages 39926-39932
    Link Publication
  • 2007
    Title The first ankyrin-like repeat is the minimum indispensable key structure for functional assembly of homo- and heteromeric TRPC4/TRPC5 channels
    DOI 10.1016/j.ceca.2007.05.015
    Type Journal Article
    Author Schindl R
    Journal Cell Calcium
    Pages 260-269
  • 2006
    Title Dynamic but not constitutive association of calmodulin with rat TRPV6 channels enables fine tuning of Ca2+-dependent inactivation
    DOI 10.1113/jphysiol.2006.118661
    Type Journal Article
    Author Derler I
    Journal The Journal of Physiology
    Pages 31-44
    Link Publication
  • 2006
    Title Fast and Selective Ammonia Transport by Aquaporin-8*
    DOI 10.1074/jbc.m609343200
    Type Journal Article
    Author Saparov S
    Journal Journal of Biological Chemistry
    Pages 5296-5301
    Link Publication
  • 2010
    Title Resting State Orai1 Diffuses as Homotetramer in the Plasma Membrane of Live Mammalian Cells*
    DOI 10.1074/jbc.m110.177881
    Type Journal Article
    Author Madl J
    Journal Journal of Biological Chemistry
    Pages 41135-41142
    Link Publication
  • 2009
    Title Recent progress on STIM1 domains controlling Orai activation
    DOI 10.1016/j.ceca.2009.08.003
    Type Journal Article
    Author Schindl R
    Journal Cell Calcium
    Pages 227-232
  • 2009
    Title No facilitator required for membrane transport of hydrogen sulfide
    DOI 10.1073/pnas.0902952106
    Type Journal Article
    Author Mathai J
    Journal Proceedings of the National Academy of Sciences
    Pages 16633-16638
    Link Publication
  • 2009
    Title 110 Years of the Meyer–Overton Rule: Predicting Membrane Permeability of Gases and Other Small Compounds
    DOI 10.1002/cphc.200900270
    Type Journal Article
    Author Missner A
    Journal ChemPhysChem
    Pages 1405-1414
    Link Publication
  • 2009
    Title Mechanistic view on domains mediating STIM1–Orai coupling
    DOI 10.1111/j.1600-065x.2009.00815.x
    Type Journal Article
    Author Fahrner M
    Journal Immunological Reviews
    Pages 99-112
  • 2009
    Title Stable, Non-Destructive Immobilization of Native Nuclear Membranes to Micro-Structured PDMS for Single-Molecule Force Spectroscopy
    DOI 10.1002/cphc.200900219
    Type Journal Article
    Author Rangl M
    Journal ChemPhysChem
    Pages 1553-1558
    Link Publication
  • 2009
    Title Plasticity in Ca2+ selectivity of Orai1/Orai3 heteromeric channel
    DOI 10.1073/pnas.0907714106
    Type Journal Article
    Author Schindl R
    Journal Proceedings of the National Academy of Sciences
    Pages 19623-19628
    Link Publication
  • 2008
    Title Cholesterol's decoupling effect on membrane partitioning and permeability revisited: Is there anything beyond Fick's law of diffusion?
    DOI 10.1016/j.bbamem.2008.05.001
    Type Journal Article
    Author Missner A
    Journal Biochimica et Biophysica Acta (BBA) - Biomembranes
    Pages 2154-2156
    Link Publication
  • 2018
    Title New Avenues for Matter-Wave-Enhanced Spectroscopy
    DOI 10.1007/978-3-319-64346-5_2
    Type Book Chapter
    Author Rodewald J
    Publisher Springer Nature
    Pages 21-34
  • 2012
    Title Structure, Regulation and Biophysics of ICRAC, STIM/Orai1
    DOI 10.1007/978-94-007-2888-2_16
    Type Book Chapter
    Author Derler I
    Publisher Springer Nature
    Pages 383-410
  • 2012
    Title Electrostatically Induced Recruitment of Membrane Peptides into Clusters Requires Ligand Binding at Both Interfaces
    DOI 10.1371/journal.pone.0052839
    Type Journal Article
    Author Antonenko Y
    Journal PLoS ONE
    Link Publication
  • 2013
    Title Single-Molecule Analysis of the Recognition Forces Underlying Nucleo-Cytoplasmic Transport
    DOI 10.1002/ange.201305359
    Type Journal Article
    Author Rangl M
    Journal Angewandte Chemie
    Pages 10546-10549
    Link Publication
  • 2013
    Title Long and Short Lipid Molecules Experience the Same Interleaflet Drag in Lipid Bilayers
    DOI 10.1103/physrevlett.110.268101
    Type Journal Article
    Author Horner A
    Journal Physical Review Letters
    Pages 268101
    Link Publication

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