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Molecular Mechanisms of Cell Signaling

Molecular Mechanisms of Cell Signaling

Manuela Baccarini (ORCID: 0000-0002-3033-391X)
  • Grant DOI 10.55776/W1220
  • Funding program Doctoral Programs
  • Status ended
  • Start May 1, 2009
  • End October 31, 2015
  • Funding amount € 2,607,696
  • E-mail

Disciplines

Biology (75%); Medical-Theoretical Sciences, Pharmacy (25%)

Keywords

    Signaling, Signaling Complexes, Signaling Cascades, Signaling Platforms (Cytoskeleton), Signaling Cross-Talk, Signal Specifity

Abstract

Cells manage to survive, proliferate, and differentiate in their environment by interpreting the signals they receive from it and translating them into the right output. If signaling goes awry, even only in part of the cells, the whole organism is at risk. The MFPL is home to a strong group of internationally recognized scientists that use a combination of biochemistry, molecular biology, cell biology, and genetics to study cell signaling in different experimental systems including yeast, plants, mammalian cells and mice. The planned doctoral program concentrates on two main questions of this complex field: i) the impact of post-translational modifications, complex formation, and subcellular localization on the biogenesis and regulation of signaling networks and of the enzymes they comprise; and ii) the mechanisms by which distinct cascades, such as those that signal proliferation, interact with others signaling differentiation, stress, or inflammation. Finding the answers to these questions requires a comprehensive, state-of-the art multi-disciplinary approach. The proposed program is designed to meet the needs of the next generation of signal transduction researchers. Key features of the program will be: 1. Competitive selection of PhD students and supervisors 2. In-depth expert training in signal transduction, combined with cross-disciplinary training under the umbrellaof the International VBC Program, with which the Program will be associated 3. Individualized training on site and abroad, according to individual needs and interests 4. Extensive training in communication skills and training in management skills 5. Supervision by a PhD Thesis Committee (at least 3 PIs chosen by the student on the basis of their scientific background and expertise) 6. Extensive support for the communication of students with the international scientific community through participation in workshops and meetings 7. Intensive, regular contacts between the Cell Signaling Faculty and students, as well as among the students, to foster corporate identity and collaborative research. This blend of technological and transferable skills, together with the strong elements of networking at the local and global level, will equip the students with a competitive professional profile and increase their career chances.

Consortium
  • Christian Seiser, Medizinische Universität Wien
    consortium member (01.05.2009 - 31.10.2015)
  • Egon Ogris, Medizinische Universität Wien
    consortium member (01.05.2009 - 31.10.2015)
  • Manuela Baccarini, Universität Wien
    consortium member (01.05.2009 - 31.10.2015)
  • Pavel Kovarik, Universität Wien
    consortium member (01.05.2009 - 31.10.2015)
  • Thomas Decker, Universität Wien
    consortium member (01.05.2009 - 31.10.2015)
Research institution(s)
  • Medizinische Universität Wien
  • Universität Wien
Project participants
  • Wolfram Weckwerth, Universität Wien , national collaboration partner
  • Erwin F. Wagner, Medizinische Universität Wien , national collaboration partner
  • Jiri Friml, Institute of Science and Technology Austria - ISTA , national collaboration partner
  • Roland Foisner, Medizinische Universität Wien , associated research partner
International project participants
  • Estelle Sontag, University of Newcastle - Australia
  • Liliane Schoofs, Katholieke Universiteit Leuven - Belgium
  • Anne-Claude Gingras, Mount Sinai Hospital - Canada
  • James R. Davie, University of Manitoba - Canada
  • Pavel Hozak, Academy of Sciences of the Czech Republic - Czechia
  • Fulvio Reggiori, Aarhus University - Denmark
  • Guillaume Balavoine, Université Paris Diderot - Paris 7 - France
  • Fatiha Nothias, Universite Pierre et Marie Curie - France
  • Alain Eychene, Université Paris Sud - France
  • Simonetta Piatti, Centre National de la Recherche Scientifique - France
  • Gisèle Bonne, INSERM U 582 - France
  • Rolf Schröder, Universitätsklinikum Erlangen - Germany
  • Bettina Warscheid, Universität Freiburg - Germany
  • Carsten J. Kirschning, Universität Essen - Germany
  • Jörg Höhfeld, Universität Bonn - Germany
  • Dieter O. Fürst, Universität Bonn - Germany
  • Dieter Saur, Technische Universität München - Germany
  • Juri Rappsilber, Technische Universität Berlin - Germany
  • Carsten Schultz, Ruprecht-Karls-Universität Heidelberg - Germany
  • Markus Engstler, Technische Universität Darmstadt - Germany
  • Peter J. Murray, Max-Planck-Gesellschaft - Germany
  • Emmanuelle Charpentier, Max-Planck-Gesellschaft - Germany
  • Oliver Daumke, Max Delbrück Centrum für molekulare Medizin - Germany
  • Lars Dölken, Julius-Maximilians-Universität Würzburg - Germany
  • Frank Bradke, Helmholtzgesellschaft - Germany
  • Dmitri I. Svergun, European Molecular Biology Laboratory Hamburg - Germany
  • Detlev Arendt, European Molecular Biology Laboratory - Germany
  • Harald Herrmann-Lerdon, Deutsches Krebsforschungszentrum - Germany
  • Wolfgang Fischle, Max-Planck-Gesellschaft - Germany
  • Walter Kolch, University College of Dublin - Ireland
  • Yuwal Garini, Bar-Ilan University - Israel
  • Maria Ina Arnone, Stazione Zoologica Anton Dohrn - Italy
  • Giovanna Lattanzi, Consiglio Nazionale delle Ricerche - Italy
  • Susanna Chiocca, European Institute of Oncology Milano - Italy
  • Giuseppe Novelli, National Agency for the Evaluation of Universities and Research Institutes - Italy
  • Harald Hausen, Bergen High Technology Centre - Norway
  • Bartosz Rozycki, Polish Academy of Sciences - Poland
  • Maria Carmo-Fonseca, University of Lisbon - Portugal
  • Mariano Barbacid, Centro National de Investigaciones Oncologicas - Spain
  • Ethel Queralt, Institut d´Investigació Biomédica de Bellvitge (IDIBELL) - Spain
  • José A. Bengoechea, Recinte Hospital Joan March - Spain
  • Francesc Posas, Universitat Pompeu Fabra - Spain
  • Eulalia De Nadal Clanchet, Universitat Pompeu Fabra - Spain
  • Sofia Johansson, Karolinska Institute - Sweden
  • Birthe Fahrenkrog, Universität Basel - Switzerland
  • Greta Guarda, University of Lausanne - Switzerland
  • Josef Jiricny, University of Zurich - Switzerland
  • Ruedi Aebersold, ETH Zürich - Switzerland
  • Matthias Peter, ETH Hönggerberg - Switzerland
  • Patrick Matthias, Friedrich Miescher Institute for Biomedical Research - Switzerland
  • Ron D. Vale, University of California at San Francisco - USA
  • Ruslan Medzhitov, Yale University School of Medicine - USA
  • Elisabetta Ullu, Yale University School of Medicine - USA
  • Robert D. Schreiber, Washington University School of Medicine - USA
  • Yongna Xing, University of Wisconsin-Madison - USA
  • Wenqing Xu, University of Washington - USA
  • Stanley C. Froehner, University of Washington - USA
  • Dylan Taatjes, University of Colorado Boulder - USA
  • Marsha R. Rosner, University of Chicago - USA
  • Kevan M. Shokat, University of California at San Francisco - USA
  • James T. Kadonaga, University of California, San Diego - USA
  • Karsten Sauer, The Scripps Research Institute - USA
  • Robert D. Goldman, Northwestern University - USA
  • David E. Levy, New York University School of Medicine - USA
  • Perry J. Blackshear, National Institute of Environmental Health Sciences - USA
  • Michael M. Bustin, National Cancer Institute / NIH - USA
  • James E. Bradner, Harvard Medical School - USA
  • Christian Schindler, Columbia University New York - USA
  • George R. Stark, Cleveland Clinic - USA
  • Amanda Jamieson, Brown University - USA
  • James H. Hurley, University of California Berkeley - USA
  • Uwe Vinkemeier, University of Nottingham - United Kingdom
  • Adele Marston, University of Edinburgh - United Kingdom
  • Michael A. J. Ferguson, University of Dundee - United Kingdom
  • Omar Qureshi, The University of Birmingham - United Kingdom
  • Harvey T. Mcmahon, Medical Research Council - United Kingdom
  • David Barford, Medical Research Council - United Kingdom
  • Julian Downward, Imperial Cancer Research Fund - United Kingdom
  • Mathias Gautel, King´s College London - United Kingdom
  • Jonathon Pines, Institute of Cancer Research - United Kingdom
  • Sharon Tooze, Francis Crick Institute - United Kingdom
  • Christopher J. Hutchison, Durham University - United Kingdom
  • David Tuveson, Cancer Research UK - United Kingdom
  • Tony Ng, King´s College London - United Kingdom

Research Output

  • 16325 Citations
  • 65 Publications
Publications
  • 2016
    Title Molecular insights into the premature aging disease progeria
    DOI 10.1007/s00418-016-1411-1
    Type Journal Article
    Author Vidak S
    Journal Histochemistry and Cell Biology
    Pages 401-417
    Link Publication
  • 2016
    Title Nucleo-cytoplasmic shuttling of the endonuclease ankyrin repeats and LEM domain-containing protein 1 (Ankle1) is mediated by canonical nuclear export- and nuclear import signals
    DOI 10.1186/s12860-016-0102-z
    Type Journal Article
    Author Zlopasa L
    Journal BMC Cell Biology
    Pages 23
    Link Publication
  • 2017
    Title Nucleoplasmic lamins define growth-regulating functions of lamina-associated polypeptide 2a in progeria cells
    DOI 10.1242/jcs.208462
    Type Journal Article
    Author Vidak S
    Journal Journal of Cell Science
    Link Publication
  • 2016
    Title Essential Nonredundant Function of the Catalytic Activity of Histone Deacetylase 2 in Mouse Development
    DOI 10.1128/mcb.00639-15
    Type Journal Article
    Author Hagelkruys A
    Journal Molecular and Cellular Biology
    Pages 462-474
    Link Publication
  • 2015
    Title Promoter Occupancy of STAT1 in Interferon Responses Is Regulated by Processive Transcription
    DOI 10.1128/mcb.01097-14
    Type Journal Article
    Author Wiesauer I
    Journal Molecular and Cellular Biology
    Pages 716-727
    Link Publication
  • 2015
    Title Repulsive Axon Guidance by Draxin Is Mediated by Protein Kinase B (Akt), Glycogen Synthase Kinase-3ß (GSK-3ß) and Microtubule-Associated Protein 1B
    DOI 10.1371/journal.pone.0119524
    Type Journal Article
    Author Meli R
    Journal PLOS ONE
    Link Publication
  • 2014
    Title A single allele of Hdac2 but not Hdac1 is sufficient for normal mouse brain development in the absence of its paralog
    DOI 10.1242/dev.100487
    Type Journal Article
    Author Hagelkruys A
    Journal Development
    Pages 604-616
    Link Publication
  • 2014
    Title H3S28 phosphorylation is a hallmark of the transcriptional response to cellular stress
    DOI 10.1101/gr.176255.114
    Type Journal Article
    Author Sawicka A
    Journal Genome Research
    Pages 1808-1820
    Link Publication
  • 2014
    Title Sensing core histone phosphorylation — A matter of perfect timing
    DOI 10.1016/j.bbagrm.2014.04.013
    Type Journal Article
    Author Sawicka A
    Journal Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms
    Pages 711-718
    Link Publication
  • 2015
    Title Alike but Different: RAF Paralogs and Their Signaling Outputs
    DOI 10.1016/j.cell.2015.04.045
    Type Journal Article
    Author Desideri E
    Journal Cell
    Pages 967-970
    Link Publication
  • 2015
    Title Proliferation of progeria cells is enhanced by lamina-associated polypeptide 2a (LAP2a) through expression of extracellular matrix proteins
    DOI 10.1101/gad.263939.115
    Type Journal Article
    Author Vidak S
    Journal Genes & Development
    Pages 2022-2036
    Link Publication
  • 2015
    Title Innate Immune Response to Streptococcus pyogenes Depends on the Combined Activation of TLR13 and TLR2
    DOI 10.1371/journal.pone.0119727
    Type Journal Article
    Author Fieber C
    Journal PLOS ONE
    Link Publication
  • 2014
    Title “RAF” neighborhood: Protein–protein interaction in the Raf/Mek/Erk pathway
    DOI 10.1016/j.febslet.2014.06.025
    Type Journal Article
    Author Cseh B
    Journal FEBS Letters
    Pages 2398-2406
    Link Publication
  • 2013
    Title Difficulties in Generating Specific Antibodies for Immunohistochemical Detection of Nitrosylated Tubulins
    DOI 10.1371/journal.pone.0068168
    Type Journal Article
    Author Kamnev A
    Journal PLoS ONE
    Link Publication
  • 2012
    Title Conditional Stat1 Ablation Reveals the Importance of Interferon Signaling for Immunity to Listeria monocytogenes Infection
    DOI 10.1371/journal.ppat.1002763
    Type Journal Article
    Author Kernbauer E
    Journal PLoS Pathogens
    Link Publication
  • 2012
    Title The endonuclease Ankle1 requires its LEM and GIY-YIG motifs for DNA cleavage in vivo
    DOI 10.1242/jcs.098392
    Type Journal Article
    Author Brachner A
    Journal Journal of Cell Science
    Pages 1048-1057
    Link Publication
  • 2012
    Title M-Track: detecting short-lived protein-protein interactions in vivo
    DOI 10.1038/nmeth.2017
    Type Journal Article
    Author Zuzuarregui A
    Journal Nature Methods
    Pages 594-596
    Link Publication
  • 2012
    Title Histone H3 phosphorylation – A versatile chromatin modification for different occasions
    DOI 10.1016/j.biochi.2012.04.018
    Type Journal Article
    Author Sawicka A
    Journal Biochimie
    Pages 2193-2201
    Link Publication
  • 2013
    Title Divergent roles of HDAC1 and HDAC2 in the regulation of epidermal development and tumorigenesis
    DOI 10.1038/emboj.2013.243
    Type Journal Article
    Author Winter M
    Journal The EMBO Journal
    Pages 3176-3191
    Link Publication
  • 2012
    Title Akt-Mediated Regulation of Autophagy and Tumorigenesis Through Beclin 1 Phosphorylation
    DOI 10.1126/science.1225967
    Type Journal Article
    Author Wang R
    Journal Science
    Pages 956-959
    Link Publication
  • 2012
    Title Aggrephagy: Selective Disposal of Protein Aggregates by Macroautophagy
    DOI 10.1155/2012/736905
    Type Journal Article
    Author Lamark T
    Journal International Journal of Cell Biology
    Pages 736905
    Link Publication
  • 2012
    Title A Downstream CpG Island Controls Transcript Initiation and Elongation and the Methylation State of the Imprinted Airn Macro ncRNA Promoter
    DOI 10.1371/journal.pgen.1002540
    Type Journal Article
    Author Koerner M
    Journal PLoS Genetics
    Link Publication
  • 2012
    Title Sustained Generation of Nitric Oxide and Control of Mycobacterial Infection Requires Argininosuccinate Synthase 1
    DOI 10.1016/j.chom.2012.07.012
    Type Journal Article
    Author Qualls J
    Journal Cell Host & Microbe
    Pages 313-323
    Link Publication
  • 2013
    Title Transcription and beyond: the role of mammalian class I lysine deacetylases
    DOI 10.1007/s00412-013-0441-x
    Type Journal Article
    Author Moser M
    Journal Chromosoma
    Pages 67-78
    Link Publication
  • 2013
    Title CDK8 Kinase Phosphorylates Transcription Factor STAT1 to Selectively Regulate the Interferon Response
    DOI 10.1016/j.immuni.2012.10.017
    Type Journal Article
    Author Bancerek J
    Journal Immunity
    Pages 250-262
    Link Publication
  • 2013
    Title Intermediate filament-associated cytolinker plectin 1c destabilizes microtubules in keratinocytes
    DOI 10.1091/mbc.e12-06-0488
    Type Journal Article
    Author Valencia R
    Journal Molecular Biology of the Cell
    Pages 768-784
    Link Publication
  • 2013
    Title Lamina-associated polypeptide (LAP)2a and nucleoplasmic lamins in adult stem cell regulation and disease
    DOI 10.1016/j.semcdb.2013.12.009
    Type Journal Article
    Author Gesson K
    Journal Seminars in Cell & Developmental Biology
    Pages 116-124
    Link Publication
  • 2013
    Title An analogue-sensitive approach identifies basal body rotation and flagellum attachment zone elongation as key functions of PLK in Trypanosoma brucei
    DOI 10.1091/mbc.e12-12-0846
    Type Journal Article
    Author Lozano-Núñez A
    Journal Molecular Biology of the Cell
    Pages 1321-1333
    Link Publication
  • 2013
    Title MEK1 Is Required for PTEN Membrane Recruitment, AKT Regulation, and the Maintenance of Peripheral Tolerance
    DOI 10.1016/j.molcel.2013.01.037
    Type Journal Article
    Author Zmajkovicova K
    Journal Molecular Cell
    Pages 43-55
    Link Publication
  • 2013
    Title The Tyrosine Kinase Btk Regulates the Macrophage Response to Listeria monocytogenes Infection
    DOI 10.1371/journal.pone.0060476
    Type Journal Article
    Author Köprülü A
    Journal PLoS ONE
    Link Publication
  • 2014
    Title Responses of innate immune cells to group A Streptococcus
    DOI 10.3389/fcimb.2014.00140
    Type Journal Article
    Author Fieber C
    Journal Frontiers in Cellular and Infection Microbiology
    Pages 140
    Link Publication
  • 2014
    Title Chemical chaperone ameliorates pathological protein aggregation in plectin-deficient muscle
    DOI 10.1172/jci71919
    Type Journal Article
    Author Winter L
    Journal Journal of Clinical Investigation
    Pages 1144-1157
    Link Publication
  • 2014
    Title CD4+ T cell lineage integrity is controlled by the histone deacetylases HDAC1 and HDAC2
    DOI 10.1038/ni.2864
    Type Journal Article
    Author Boucheron N
    Journal Nature Immunology
    Pages 439-448
    Link Publication
  • 2014
    Title Neuromuscular synapse integrity requires linkage of acetylcholine receptors to postsynaptic intermediate filament networks via rapsyn-plectin 1f complexes
    DOI 10.1091/mbc.e14-06-1174
    Type Journal Article
    Author Mihailovska E
    Journal Molecular Biology of the Cell
    Link Publication
  • 2015
    Title Plectin isoform 1-dependent nuclear docking of desmin networks affects myonuclear architecture and expression of mechanotransducers
    DOI 10.1093/hmg/ddv438
    Type Journal Article
    Author Staszewska I
    Journal Human Molecular Genetics
    Pages 7373-7389
    Link Publication
  • 2012
    Title In vivo Polycomb kinetics and mitotic chromatin binding distinguish stem cells from differentiated cells
    DOI 10.1101/gad.184648.111
    Type Journal Article
    Author Fonseca J
    Journal Genes & Development
    Pages 857-871
    Link Publication
  • 2012
    Title Both TLR2 and TRIF Contribute to Interferon-ß Production during Listeria Infection
    DOI 10.1371/journal.pone.0033299
    Type Journal Article
    Author Aubry C
    Journal PLoS ONE
    Link Publication
  • 2012
    Title Polo-like kinase is necessary for flagellum inheritance in Trypanosoma brucei
    DOI 10.1242/jcs.101162
    Type Journal Article
    Author Ikeda K
    Journal Journal of Cell Science
    Pages 3173-3184
    Link Publication
  • 2011
    Title Chaperone-Mediated Autophagy Is Required for Tumor Growth
    DOI 10.1126/scitranslmed.3003182
    Type Journal Article
    Author Kon M
    Journal Science Translational Medicine
    Link Publication
  • 2011
    Title The Biology of HDAC in Cancer: The Nuclear and Epigenetic Components
    DOI 10.1007/978-3-642-21631-2_2
    Type Book Chapter
    Author Hagelkruys A
    Publisher Springer Nature
    Pages 13-37
  • 2011
    Title Distinct and redundant functions of histone deacetylases HDAC1 and HDAC2 in proliferation and tumorigenesis
    DOI 10.4161/cc.10.3.14712
    Type Journal Article
    Author Jurkin J
    Journal Cell Cycle
    Pages 406-412
    Link Publication
  • 2011
    Title Tristetraprolin-driven regulatory circuit controls quality and timing of mRNA decay in inflammation
    DOI 10.1038/msb.2011.93
    Type Journal Article
    Author Kratochvill F
    Journal Molecular Systems Biology
    Link Publication
  • 2010
    Title MAPK Phosphatase AP2C3 Induces Ectopic Proliferation of Epidermal Cells Leading to Stomata Development in Arabidopsis
    DOI 10.1371/journal.pone.0015357
    Type Journal Article
    Author Umbrasaite J
    Journal PLoS ONE
    Link Publication
  • 2010
    Title Epigenetic Regulation of a Murine Retrotransposon by a Dual Histone Modification Mark
    DOI 10.1371/journal.pgen.1000927
    Type Journal Article
    Author Brunmeir R
    Journal PLoS Genetics
    Link Publication
  • 2010
    Title Tubulohelical membrane arrays: From the initial observation to the elucidation of nanophysical properties and cellular function
    DOI 10.1186/1757-5036-3-13
    Type Journal Article
    Author Reipert S
    Journal PMC Biophysics
    Pages 13
    Link Publication
  • 2010
    Title Lamina-Independent Lamins in the Nuclear Interior Serve Important Functions
    DOI 10.1101/sqb.2010.75.018
    Type Journal Article
    Author Dechat T
    Journal Cold Spring Harbor Symposia on Quantitative Biology
    Pages 533-543
    Link Publication
  • 2010
    Title A Phosphorylation Switch Regulates the Transcriptional Activation of Cell Cycle Regulator p21 by Histone Deacetylase Inhibitors*
    DOI 10.1074/jbc.m110.184481
    Type Journal Article
    Author Simboeck E
    Journal Journal of Biological Chemistry
    Pages 41062-41073
    Link Publication
  • 2010
    Title Nonconventional Initiation Complex Assembly by STAT and NF-?B Transcription Factors Regulates Nitric Oxide Synthase Expression
    DOI 10.1016/j.immuni.2010.07.001
    Type Journal Article
    Author Farlik M
    Journal Immunity
    Pages 25-34
    Link Publication
  • 2010
    Title Monoclonal Antibodies Specific for Disease-Associated Point-Mutants: Lamin A/C R453W and R482W
    DOI 10.1371/journal.pone.0010604
    Type Journal Article
    Author Roblek M
    Journal PLoS ONE
    Link Publication
  • 2009
    Title Characterization of the Interferon-Producing Cell in Mice Infected with Listeria monocytogenes
    DOI 10.1371/journal.ppat.1000355
    Type Journal Article
    Author Stockinger S
    Journal PLoS Pathogens
    Link Publication
  • 2009
    Title Targeted Inactivation of a Developmentally Regulated Neural Plectin Isoform (Plectin 1c) in Mice Leads to Reduced Motor Nerve Conduction Velocity*
    DOI 10.1074/jbc.m109.018150
    Type Journal Article
    Author Fuchs P
    Journal Journal of Biological Chemistry
    Pages 26502-26509
    Link Publication
  • 2008
    Title Autophagosome-Independent Essential Function for the Autophagy Protein Atg5 in Cellular Immunity to Intracellular Pathogens
    DOI 10.1016/j.chom.2008.10.003
    Type Journal Article
    Author Zhao Z
    Journal Cell Host & Microbe
    Pages 458-469
    Link Publication
  • 2011
    Title Biological challenges of BRAF inhibitor therapy
    DOI 10.1016/j.molonc.2011.01.005
    Type Journal Article
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    DOI 10.1016/j.sbi.2011.07.006
    Type Journal Article
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    DOI 10.1007/978-3-642-21631-2
    Type Book
    Publisher Springer Nature
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    DOI 10.1007/s11248-011-9519-5
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    DOI 10.1007/s11912-011-0198-4
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    DOI 10.1038/emboj.2010.264
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    DOI 10.1016/j.cub.2009.11.022
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    DOI 10.1093/jnci/djq037
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  • 2009
    Title Listeria monocytogenes ActA-mediated escape from autophagic recognition
    DOI 10.1038/ncb1967
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    DOI 10.1038/nature00766
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    DOI 10.15252/embj.2021108234
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    Author Beck M
    Journal The EMBO Journal
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