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Biomolecular Technology of Proteins - BioToP

Biomolecular Technology of Proteins - BioToP

Chris Oostenbrink (ORCID: 0000-0002-4232-2556)
  • Grant DOI 10.55776/W1224
  • Funding program Doctoral Programs
  • Status ended
  • Start April 1, 2010
  • End December 31, 2023
  • Funding amount € 10,727,134

Disciplines

Biology (100%)

Keywords

    Protein design and engineering, Cell factory

Abstract

Recombinant production of native and engineered proteins by biotechnological and biopharmaceutical means is a complex process that requires an inter- and multidisciplinary educational training in fields ranging from basic biochemistry and cell biology to production systems based on different organisms of varying complexity, bioinformatics and downstream processing. The proposed doctoral program BioToP (Biomolecular Technology of Proteins) will integrate basic and applied research in the field of modern recombinant protein science and production (from gene to product). It is a joint application of the BOKU Departments of Applied Genetics and Cell Biology, Biotechnology, Chemistry, Food Sciences and Technology, Material Sciences and Process Engineering and Nanobiotechnology, which together constitute the VIBT (Vienna Institute of Biotechnology) of BOKU. In detail, BioToP will provide comprehensive and thorough up-to-date research training in the fields of (i) analysis, design and engineering of proteins, (ii) biosynthesis, posttranslational modifications and trafficking of (recombinant) proteins, (iii) expression systems and cell factories, and (iv) bioinformatics and molecular modelling. The already existing unique cluster of basic and applied research represented by scientists in the field of biotechnology at BOKU provides an excellent infrastructure, the critical mass and a stimulating training environment to facilitate interdisciplinary and translational research. BioToP will provide the unifying educational platform for an international PhD program that will attract highly qualified graduate students from all over the world. Students selected by a competitive and transparent admission procedure will have the opportunity to work in any of 14 research teams with excellent scientific competence and infrastructure as indicated by more than 420 SCI publications and 54 approved FWF projects within the period 2004-2009. Additionally, students will benefit from several existing national and European research networks and industrial competence centres coordinated by BOKU, e.g. the Austrian Center for Biopharmaceutical Technology and three Christian Doppler Laboratories. Alltogether this will provide an excellent, creative and stimulating environment for research and educational training, and prepare PhD students for a successful career in basic and/or applied research. A long-term goal is to apply the same competitive selection criteria and training opportunities for all biotechnology graduate students at BOKU. In a highly competitive scientific and economic environment this will strengthen the position of BOKU as a leader in biotechnological research and increase its attractiveness for highly motivated students as well as for industrial partners.

Consortium
  • Alois Jungbauer, Universität für Bodenkultur Wien
    consortium member (01.04.2010 - 31.12.2023)
  • Chris Oostenbrink, Universität für Bodenkultur Wien
    consortium member (01.04.2010 - 31.12.2023)
  • Christian Obinger, Universität für Bodenkultur Wien
    consortium member (01.04.2010 - 31.12.2023)
  • Diethard Mattanovich, Universität für Bodenkultur Wien
    consortium member (01.04.2010 - 31.12.2023)
  • Dietmar Haltrich, Universität für Bodenkultur Wien
    consortium member (01.04.2010 - 31.12.2023)
  • Eva Stöger, Universität für Bodenkultur Wien
    consortium member (01.04.2010 - 31.12.2023)
  • Friedrich Altmann, Universität für Bodenkultur Wien
    consortium member (01.04.2010 - 31.12.2023)
  • Herta Steinkellner, Universität für Bodenkultur Wien
    consortium member (01.04.2010 - 31.12.2023)
  • Iain B. Wilson, Universität für Bodenkultur Wien
    consortium member (01.04.2010 - 31.12.2023)
  • Johannes Grillari, Universität für Bodenkultur Wien
    consortium member (01.04.2010 - 31.12.2023)
  • Lukas Mach, Universität für Bodenkultur Wien
    consortium member (01.04.2010 - 31.12.2023)
  • Nicole Borth, Universität für Bodenkultur Wien
    consortium member (01.04.2010 - 31.12.2023)
  • Reingard Grabherr, Universität für Bodenkultur Wien
    consortium member (01.04.2010 - 31.12.2023)
  • Renate Kunert, Universität für Bodenkultur Wien
    consortium member (01.04.2010 - 31.12.2023)
  • Roland Ludwig, Universität für Bodenkultur Wien
    consortium member (01.04.2010 - 31.12.2023)
Research institution(s)
  • Universität für Bodenkultur Wien

Research Output

  • 22665 Citations
  • 631 Publications
Publications
  • 2024
    Title Characterization of a Pyranose Oxidase/C-Glycoside Oxidase from Microbacterium sp. 3H14, Belonging to the Unexplored Clade II of Actinobacterial POx/CGOx
    DOI 10.3390/biom14121510
    Type Journal Article
    Author Martschini A
    Journal Biomolecules
    Pages 1510
    Link Publication
  • 2013
    Title Metabolic profiling of amino acids in cellular samples via zwitterionic sub-2 µm particle size HILIC-MS/MS and a uniformly 13C labeled internal standard
    DOI 10.1007/s00216-013-7456-2
    Type Journal Article
    Author Guerrasio R
    Journal Analytical and Bioanalytical Chemistry
    Pages 915-922
  • 2013
    Title One-shot vaccination with an insect cell-derived low-dose influenza A H7 virus-like particle preparation protects mice against H7N9 challenge
    DOI 10.1016/j.vaccine.2013.11.036
    Type Journal Article
    Author Klausberger M
    Journal Vaccine
    Pages 355-362
    Link Publication
  • 2013
    Title Sample introduction of single selenized yeast cells ( Saccharomyces cerevisiae ) by micro droplet generation into an ICP-sector field mass spectrometer for label-free detection of trace elements
    DOI 10.1039/c3ja30370e
    Type Journal Article
    Author Shigeta K
    Journal Journal of Analytical Atomic Spectrometry
    Pages 637-645
  • 2013
    Title Powerful expression in Chinese Hamster Ovary cells using bacterial artificial chromosomes: parameters influencing productivity
    DOI 10.1186/1753-6561-7-s6-p25
    Type Journal Article
    Author Sommeregger W
    Journal BMC Proceedings
    Link Publication
  • 2013
    Title Molecular dynamics simulations give insight into d-glucose dioxidation at C2 and C3 by Agaricus meleagris pyranose dehydrogenase
    DOI 10.1007/s10822-013-9645-7
    Type Journal Article
    Author Graf M
    Journal Journal of Computer-Aided Molecular Design
    Pages 295-304
    Link Publication
  • 2012
    Title Engineering of Sialylated Mucin-type O-Glycosylation in Plants*
    DOI 10.1074/jbc.m112.402685
    Type Journal Article
    Author Castilho A
    Journal Journal of Biological Chemistry
    Pages 36518-36526
    Link Publication
  • 2012
    Title Rationalization of stereospecific binding of propranolol to cytochrome P450 2D6 by free energy calculations
    DOI 10.1007/s00249-012-0865-x
    Type Journal Article
    Author Nagy G
    Journal European Biophysics Journal
    Pages 1065-1076
    Link Publication
  • 2012
    Title Construction of a Stability Landscape of the CH3 Domain of Human IgG1 by Combining Directed Evolution with High Throughput Sequencing
    DOI 10.1016/j.jmb.2012.07.017
    Type Journal Article
    Author Traxlmayr M
    Journal Journal of Molecular Biology
    Pages 397-412
    Link Publication
  • 2012
    Title U13C cell extract of Pichia pastoris – a powerful tool for evaluation of sample preparation in metabolomics
    DOI 10.1002/jssc.201200447
    Type Journal Article
    Author Neubauer S
    Journal Journal of Separation Science
    Pages 3091-3105
  • 2012
    Title miRNAs – pathway engineering of CHO cell factories that avoids translational burdening
    DOI 10.1016/j.tibtech.2012.05.002
    Type Journal Article
    Author Hackl M
    Journal Trends in Biotechnology
    Pages 405-406
  • 2012
    Title Recombinant pyranose dehydrogenase—A versatile enzyme possessing both mediated and direct electron transfer
    DOI 10.1016/j.elecom.2012.08.029
    Type Journal Article
    Author Yakovleva M
    Journal Electrochemistry Communications
    Pages 120-122
  • 2012
    Title “Cross-glycosylation” of proteins in Bacteroidales species
    DOI 10.1093/glycob/cws172
    Type Journal Article
    Author Posch G
    Journal Glycobiology
    Pages 568-577
    Link Publication
  • 2012
    Title Accurate quantification of the redox-sensitive GSH/GSSG ratios in the yeast Pichia pastoris by HILIC–MS/MS
    DOI 10.1007/s00216-012-6620-4
    Type Journal Article
    Author Haberhauer-Troyer C
    Journal Analytical and Bioanalytical Chemistry
    Pages 2031-2039
  • 2012
    Title A screening method to assess biological effects of microRNA overexpression in Chinese hamster ovary cells
    DOI 10.1002/bit.24490
    Type Journal Article
    Author Jadhav V
    Journal Biotechnology and Bioengineering
    Pages 1376-1385
  • 2012
    Title Redox Thermodynamics of High-Spin and Low-Spin Forms of Chlorite Dismutases with Diverse Subunit and Oligomeric Structures
    DOI 10.1021/bi3013033
    Type Journal Article
    Author Hofbauer S
    Journal Biochemistry
    Pages 9501-9512
    Link Publication
  • 2012
    Title Recombinant Fab expression and secretion in Escherichia coli continuous culture at medium cell densities: Influence of temperature
    DOI 10.1016/j.procbio.2011.11.024
    Type Journal Article
    Author Rodríguez-Carmona E
    Journal Process Biochemistry
    Pages 446-452
  • 2012
    Title Description of a Putative Oligosaccharyl:S-Layer Protein Transferase from the Tyrosine O-Glycosylation System of Paenibacillus alvei CCM 2051T
    DOI 10.4236/aim.2012.24069
    Type Journal Article
    Author Ristl R
    Journal Advances in Microbiology
    Pages 537-546
    Link Publication
  • 2012
    Title Characterization of a-l-Iduronidase (Aldurazyme®) and its complexes
    DOI 10.1016/j.jprot.2012.09.022
    Type Journal Article
    Author Jung G
    Journal Journal of Proteomics
    Pages 26-33
  • 2012
    Title Sulfur containing amino acids – challenge of accurate quantification
    DOI 10.1039/c2ja10377j
    Type Journal Article
    Author Rampler E
    Journal Journal of Analytical Atomic Spectrometry
    Pages 1018-1023
  • 2012
    Title Enzymatic Oxygen Scavenging for Photostability without pH Drop in Single-Molecule Experiments
    DOI 10.1021/nn301895c
    Type Journal Article
    Author Swoboda M
    Journal ACS Nano
    Pages 6364-6369
    Link Publication
  • 2012
    Title Next generation stent coatings: convergence of biotechnology and nanotechnology
    DOI 10.1016/j.tibtech.2012.05.004
    Type Journal Article
    Author Tan A
    Journal Trends in Biotechnology
    Pages 406-409
    Link Publication
  • 2012
    Title SweetBac: A New Approach for the Production of Mammalianised Glycoproteins in Insect Cells
    DOI 10.1371/journal.pone.0034226
    Type Journal Article
    Author Palmberger D
    Journal PLoS ONE
    Link Publication
  • 2012
    Title Post-Translational Regulation and Trafficking of the Granulin-Containing Protease RD21 of Arabidopsis thaliana
    DOI 10.1371/journal.pone.0032422
    Type Journal Article
    Author Gu C
    Journal PLoS ONE
    Link Publication
  • 2012
    Title Intracellular interactome of secreted antibody Fab fragment in Pichia pastoris reveals its routes of secretion and degradation
    DOI 10.1007/s00253-012-3933-3
    Type Journal Article
    Author Pfeffer M
    Journal Applied Microbiology and Biotechnology
    Pages 2503-2512
    Link Publication
  • 2012
    Title Molecular Evolution, Structure, and Function of Peroxidasins
    DOI 10.1002/cbdv.201100438
    Type Journal Article
    Author Soudi M
    Journal Chemistry & Biodiversity
    Pages 1776-1793
    Link Publication
  • 2012
    Title Impact of subunit and oligomeric structure on the thermal and conformational stability of chlorite dismutases
    DOI 10.1016/j.bbapap.2012.05.012
    Type Journal Article
    Author Hofbauer S
    Journal Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics
    Pages 1031-1038
    Link Publication
  • 2012
    Title Homodimeric ß-Galactosidase from Lactobacillus delbrueckii subsp. bulgaricus DSM 20081: Expression in Lactobacillus plantarum and Biochemical Characterization
    DOI 10.1021/jf203909e
    Type Journal Article
    Author Nguyen T
    Journal Journal of Agricultural and Food Chemistry
    Pages 1713-1721
    Link Publication
  • 2012
    Title Mass spectrometry based analysis of nucleotides, nucleosides, and nucleobases—application to feed supplements
    DOI 10.1007/s00216-012-6170-9
    Type Journal Article
    Author Neubauer S
    Journal Analytical and Bioanalytical Chemistry
    Pages 799-808
  • 2012
    Title Myrosinases TGG1 and TGG2 from Arabidopsis thaliana contain exclusively oligomannosidic N-glycans
    DOI 10.1016/j.phytochem.2012.08.023
    Type Journal Article
    Author Liebminger E
    Journal Phytochemistry
    Pages 24-30
    Link Publication
  • 2012
    Title Molecular evolution of hydrogen peroxide degrading enzymes
    DOI 10.1016/j.abb.2012.01.017
    Type Journal Article
    Author Zámocký M
    Journal Archives of Biochemistry and Biophysics
    Pages 131-144
    Link Publication
  • 2019
    Title AllergoOncology: Expression platform development and functional profiling of an anti-HER2 IgE antibody
    DOI 10.1111/all.13818
    Type Journal Article
    Author Ilieva K
    Journal Allergy
    Pages 1985-1989
    Link Publication
  • 2019
    Title The industrial yeast Pichia pastoris is converted from a heterotroph into an autotroph capable of growth on CO2
    DOI 10.1038/s41587-019-0363-0
    Type Journal Article
    Author Gassler T
    Journal Nature Biotechnology
    Pages 210-216
    Link Publication
  • 2019
    Title Influence of Lytic Polysaccharide Monooxygenase Active Site Segments on Activity and Affinity
    DOI 10.3390/ijms20246219
    Type Journal Article
    Author Laurent C
    Journal International Journal of Molecular Sciences
    Pages 6219
    Link Publication
  • 2019
    Title Molecular Conformations of Di-, Tri-, and Tetra-a-(2?8)-Linked Sialic Acid from NMR Spectroscopy and MD Simulations
    DOI 10.3390/ijms21010030
    Type Journal Article
    Author Turupcu A
    Journal International Journal of Molecular Sciences
    Pages 30
    Link Publication
  • 2019
    Title Water in protein hydration and ligand recognition
    DOI 10.1002/jmr.2810
    Type Journal Article
    Author Maurer M
    Journal Journal of Molecular Recognition
    Link Publication
  • 2019
    Title mRNA Transfection into CHO-Cells Reveals Production Bottlenecks
    DOI 10.1002/biot.201900198
    Type Journal Article
    Author Coats M
    Journal Biotechnology Journal
    Link Publication
  • 2019
    Title Cell Culture Engineering
    DOI 10.1002/9783527811410
    Type Book
    Publisher Wiley
    Link Publication
  • 2019
    Title Methods for Construction of Yeast Display Libraries of Four-Domain T-Cell Receptors
    DOI 10.1007/978-1-4939-9853-1_13
    Type Book Chapter
    Author Sádio F
    Publisher Springer Nature
    Pages 223-248
  • 2019
    Title Steric Accessibility of the Cleavage Sites Dictates the Proteolytic Vulnerability of the Anti-HIV-1 Antibodies 2F5, 2G12, and PG9 in Plants
    DOI 10.1002/biot.201900308
    Type Journal Article
    Author Tarazona A
    Journal Biotechnology Journal
    Link Publication
  • 2019
    Title Stabilization of soluble high-affinity T-cell receptor with de novo disulfide bonds
    DOI 10.1002/1873-3468.13616
    Type Journal Article
    Author Sádio F
    Journal FEBS Letters
    Pages 477-490
    Link Publication
  • 2019
    Title Redox thermodynamics of B-class dye-decolorizing peroxidases
    DOI 10.1016/j.jinorgbio.2019.110761
    Type Journal Article
    Author Pfanzagl V
    Journal Journal of Inorganic Biochemistry
    Pages 110761
    Link Publication
  • 2024
    Title Bioinformatic, Enzymatic, and Structural Characterization of Trichuris suis Hexosaminidase HEX-2
    DOI 10.1021/acs.biochem.4c00187
    Type Journal Article
    Author Dutkiewicz Z
    Journal Biochemistry
    Pages 1941-1954
    Link Publication
  • 2024
    Title Entrance channels to coproheme in coproporphyrin ferrochelatase probed by exogenous imidazole binding
    DOI 10.1016/j.jinorgbio.2024.112681
    Type Journal Article
    Author Dali A
    Journal Journal of Inorganic Biochemistry
    Pages 112681
    Link Publication
  • 2024
    Title Quantitative proteomics reveals cellular responses to individual mAb expression and tunicamycin in CHO cells
    DOI 10.1007/s00253-024-13223-1
    Type Journal Article
    Author Sulaj E
    Journal Applied Microbiology and Biotechnology
    Pages 381
    Link Publication
  • 2024
    Title Insights into structure and activity of a UDP-GlcNAc 2-epimerase involved in secondary cell wall polymer biosynthesis in Paenibacillus alvei
    DOI 10.3389/fmolb.2024.1470989
    Type Journal Article
    Author Stefanovic C
    Journal Frontiers in Molecular Biosciences
    Pages 1470989
    Link Publication
  • 2018
    Title Creation of Stable Heterothallic Strains of Komagataella phaffii Enables Dissection of Mating Gene Regulation
    DOI 10.1128/mcb.00398-17
    Type Journal Article
    Author Heistinger L
    Journal Molecular and Cellular Biology
    Link Publication
  • 2018
    Title Immune response profiling of primary monocytes and oral keratinocytes to different Tannerella forsythia strains and their cell surface mutants
    DOI 10.1111/omi.12208
    Type Journal Article
    Author Bloch S
    Journal Molecular Oral Microbiology
    Pages 155-167
  • 2018
    Title Saturation Mutagenesis by Efficient Free-Energy Calculation
    DOI 10.1021/acs.jctc.7b01099
    Type Journal Article
    Author Jandova Z
    Journal Journal of Chemical Theory and Computation
    Pages 894-904
    Link Publication
  • 2018
    Title Comparative transcriptome analysis of a Trichoplusia ni cell line reveals distinct host responses to intracellular and secreted protein products expressed by recombinant baculoviruses
    DOI 10.1016/j.jbiotec.2018.02.001
    Type Journal Article
    Author Koczka K
    Journal Journal of Biotechnology
    Pages 61-69
  • 2018
    Title Turning the tables on cytomegalovirus: targeting viral Fc receptors by CARs containing mutated CH2–CH3 IgG spacer domains
    DOI 10.1186/s12967-018-1394-x
    Type Journal Article
    Author Proff J
    Journal Journal of Translational Medicine
    Pages 26
    Link Publication
  • 2018
    Title Multiplicity of enzymatic functions in the CAZy AA3 family
    DOI 10.1007/s00253-018-8784-0
    Type Journal Article
    Author Sützl L
    Journal Applied Microbiology and Biotechnology
    Pages 2477-2492
    Link Publication
  • 2018
    Title Posttranslational modification of heme in peroxidases – Impact on structure and catalysis
    DOI 10.1016/j.abb.2018.02.008
    Type Journal Article
    Author Nicolussi A
    Journal Archives of Biochemistry and Biophysics
    Pages 14-23
    Link Publication
  • 2018
    Title A framework for large-scale dynamic metabolome drug profiling in mammalian cells: a case study analysis of the anti-cancer drug dichloroacetate
    DOI 10.1101/250670
    Type Preprint
    Author Dubuis S
    Pages 250670
    Link Publication
  • 2018
    Title Flagellin Glycoproteomics of the Periodontitis Associated Pathogen Selenomonas sputigena Reveals Previously Not Described O-glycans and Rhamnose Fragment Rearrangement Occurring on the Glycopeptides*
    DOI 10.1074/mcp.ra117.000394
    Type Journal Article
    Author Rath C
    Journal Molecular & Cellular Proteomics
    Pages 721-736
    Link Publication
  • 2018
    Title Charting the cross-functional map between transcription factors and cancer metabolism
    DOI 10.1101/250399
    Type Preprint
    Author Ortmayr K
    Pages 250399
    Link Publication
  • 2018
    Title Lessons learned from merging wet lab experiments with molecular simulation to improve mAb humanization
    DOI 10.1093/protein/gzy009
    Type Journal Article
    Author Schwaigerlehner L
    Journal Protein Engineering, Design and Selection
    Pages 257-265
    Link Publication
  • 2018
    Title Blocking negative effects of senescence in human skin fibroblasts with a plant extract
    DOI 10.1038/s41514-018-0023-5
    Type Journal Article
    Author Lämmermann I
    Journal npj Aging and Mechanisms of Disease
    Pages 4
    Link Publication
  • 2018
    Title Small extracellular vesicles and their miRNA cargo are anti-apoptotic members of the senescence-associated secretory phenotype
    DOI 10.18632/aging.101452
    Type Journal Article
    Author Terlecki-Zaniewicz L
    Journal Aging (Albany NY)
    Pages 1103-1132
    Link Publication
  • 2018
    Title A gB/CD3 bispecific BiTE antibody construct for targeting Human Cytomegalovirus-infected cells
    DOI 10.1038/s41598-018-36055-2
    Type Journal Article
    Author Brey C
    Journal Scientific Reports
    Pages 17453
    Link Publication
  • 2018
    Title Separation of virus-like particles and extracellular vesicles by flow-through and heparin affinity chromatography
    DOI 10.1016/j.chroma.2018.12.035
    Type Journal Article
    Author Reiter K
    Journal Journal of Chromatography A
    Pages 77-84
    Link Publication
  • 2018
    Title Comprehensive assessment of measurement uncertainty in 13C-based metabolic flux experiments
    DOI 10.1007/s00216-018-1017-7
    Type Journal Article
    Author Mairinger T
    Journal Analytical and Bioanalytical Chemistry
    Pages 3337-3348
    Link Publication
  • 2018
    Title Carb loading takes proteins on a ride
    DOI 10.1074/jbc.h118.002411
    Type Journal Article
    Author Schäffer C
    Journal Journal of Biological Chemistry
    Pages 5374-5375
    Link Publication
  • 2018
    Title A fast and sensitive activity assay for lytic polysaccharide monooxygenase
    DOI 10.1186/s13068-018-1063-6
    Type Journal Article
    Author Breslmayr E
    Journal Biotechnology for Biofuels
    Pages 79
    Link Publication
  • 2018
    Title Isomeric Separation and Recognition of Anionic and Zwitterionic N-glycans from Royal Jelly Glycoproteins*
    DOI 10.1074/mcp.ra117.000462
    Type Journal Article
    Author Hykollari A
    Journal Molecular & Cellular Proteomics
    Pages 2177-2196
    Link Publication
  • 2018
    Title Structural basis of cell wall anchoring by SLH domains in Paenibacillus alvei
    DOI 10.1038/s41467-018-05471-3
    Type Journal Article
    Author Blackler R
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    Title Beyond alcohol oxidase: the methylotrophic yeast Komagataella phaffii utilizes methanol also with its native alcohol dehydrogenase Adh2
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    Title Time grid-based isomer specific N-glycan analysis and detection of bi-secting Lewis X in human brain
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    Title Directed Evolution of Stabilized Monomeric CD19 for Monovalent CAR Interaction Studies and Monitoring of CAR-T Cell Patients
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    Title Microparticles and Nanoparticles from Plants—The Benefits of Bioencapsulation
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    Title Engineering the Turnover Stability of Cellobiose Dehydrogenase toward Long-Term Bioelectronic Applications
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    Title Accelerated Enveloping Distribution Sampling (AEDS) Allows for Efficient Sampling of Orthogonal Degrees of Freedom
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    Title The oxygen tolerant reductive glycine pathway in eukaryotes – a native methanol, formate and CO2 assimilation pathway in the yeast Komagataella phaffii
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    Title The papain-like cysteine proteinases NbCysP6 and NbCysP7 are highly processive enzymes with substrate specificities complementary to Nicotiana benthamiana cathepsin B
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    Title The human anti-HIV antibodies 2F5, 2G12, and PG9 differ in their susceptibility to proteolytic degradation: Down-regulation of endogenous serine and cysteine proteinase activities could improve antibody production in plant-based expression platforms
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    Title The Induction of Recombinant Protein Bodies in Different Subcellular Compartments Reveals a Cryptic Plastid-Targeting Signal in the 27-kDa ?-Zein Sequence
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    Title A pseudaminic acid or a legionaminic acid derivative transferase is strain-specifically implicated in the general protein O-glycosylation system of the periodontal pathogen Tannerella forsythia
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    Title MicroRNA-17-5p: At the Crossroads of Cancer and Aging - A Mini-Review
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    Title The S-Layer Protein of the Anammox Bacterium Kuenenia stuttgartiensis Is Heavily O-Glycosylated
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    Title Interaction with the Redox Cofactor MYW and Functional Role of a Mobile Arginine in Eukaryotic Catalase-Peroxidase
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    Title Conjugation of Native-Like HIV-1 Envelope Trimers onto Liposomes Using EDC/Sulfo-NHS Chemistry: Requirements and Limitations
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  • 2018
    Title A speculation on the tandem fasciclin 1 repeat of FLA4 proteins in angiosperms
    DOI 10.1080/15592324.2018.1507403
    Type Journal Article
    Author Turupcu A
    Journal Plant Signaling & Behavior
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  • 2018
    Title Stabilization of the CD81 Large Extracellular Loop with De Novo Disulfide Bonds Improves Its Amenability for Peptide Grafting
    DOI 10.3390/pharmaceutics10030138
    Type Journal Article
    Author Vogt S
    Journal Pharmaceutics
    Pages 138
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  • 2018
    Title Comparison of free-energy methods using a tripeptide-water model system
    DOI 10.1002/jcc.25537
    Type Journal Article
    Author Maurer M
    Journal Journal of Computational Chemistry
    Pages 2226-2242
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  • 2018
    Title The two cathepsin B-like proteases of Arabidopsis thaliana are closely related enzymes with discrete endopeptidase and carboxydipeptidase activities
    DOI 10.1515/hsz-2018-0186
    Type Journal Article
    Author Porodko A
    Journal Biological Chemistry
    Pages 1223-1235
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  • 2018
    Title Maize 16-kD ?-zein forms very unusual disulfide-bonded polymers in the endoplasmic reticulum: implications for prolamin evolution
    DOI 10.1093/jxb/ery287
    Type Journal Article
    Author Mainieri D
    Journal Journal of Experimental Botany
    Pages 5013-5027
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  • 2018
    Title A framework for large-scale metabolome drug profiling links coenzyme A metabolism to the toxicity of anti-cancer drug dichloroacetate
    DOI 10.1038/s42003-018-0111-x
    Type Journal Article
    Author Dubuis S
    Journal Communications Biology
    Pages 101
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  • 2018
    Title Human peroxidasin 1 promotes angiogenesis through ERK1/2, Akt, and FAK pathways
    DOI 10.1093/cvr/cvy179
    Type Journal Article
    Author Medfai H
    Journal Cardiovascular Research
    Pages 463-475
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  • 2018
    Title The contributions of individual galactosyltransferases to protein specific N-glycan processing in Chinese Hamster Ovary cells
    DOI 10.1016/j.jbiotec.2018.07.015
    Type Journal Article
    Author Bydlinski N
    Journal Journal of Biotechnology
    Pages 101-110
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  • 2018
    Title A yeast for all seasons – Is Pichia pastoris a suitable chassis organism for future bioproduction?
    DOI 10.1093/femsle/fny181
    Type Journal Article
    Author Gasser B
    Journal FEMS Microbiology Letters
    Link Publication
  • 2010
    Title Trichoplusia ni cells (High FiveTM) are highly efficient for the production of influenza A virus-like particles: a comparison of two insect cell lines as production platforms for influenza vaccines
    DOI 10.1007/s12033-010-9268-3
    Type Journal Article
    Author Krammer F
    Journal Molecular Biotechnology
    Pages 226-234
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  • 2010
    Title Structural and functional characterisation of the chlorite dismutase from the nitrite-oxidizing bacterium “Candidatus Nitrospira defluvii”: Identification of a catalytically important amino acid residue
    DOI 10.1016/j.jsb.2010.06.014
    Type Journal Article
    Author Kostan J
    Journal Journal of Structural Biology
    Pages 331-342
  • 2009
    Title Proline Is Not Uniquely Capable of Providing the Pivot Point for Domain Swapping in 2G12, a Broadly Neutralizing Antibody against HIV-1*
    DOI 10.1074/jbc.m109.058792
    Type Journal Article
    Author Gach J
    Journal Journal of Biological Chemistry
    Pages 1122-1127
    Link Publication
  • 2012
    Title Directed evolution of Her2/neu-binding IgG1-Fc for improved stability and resistance to aggregation by using yeast surface display
    DOI 10.1093/protein/gzs102
    Type Journal Article
    Author Traxlmayr M
    Journal Protein Engineering, Design & Selection
    Pages 255-265
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  • 2012
    Title Glycobiology Aspects of the Periodontal Pathogen Tannerella forsythia
    DOI 10.3390/biom2040467
    Type Journal Article
    Author Posch G
    Journal Biomolecules
    Pages 467-482
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  • 2012
    Title Production of four Neurospora crassa lytic polysaccharide monooxygenases in Pichia pastoris monitored by a fluorimetric assay
    DOI 10.1186/1754-6834-5-79
    Type Journal Article
    Author Kittl R
    Journal Biotechnology for Biofuels
    Pages 79
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  • 2011
    Title Insect cells for antibody production: Evaluation of an efficient alternative
    DOI 10.1016/j.jbiotec.2011.02.009
    Type Journal Article
    Author Palmberger D
    Journal Journal of Biotechnology
    Pages 160-166
  • 2011
    Title Influence of the Covalent Heme–Protein Bonds on the Redox Thermodynamics of Human Myeloperoxidase
    DOI 10.1021/bi2008432
    Type Journal Article
    Author Battistuzzi G
    Journal Biochemistry
    Pages 7987-7994
  • 2011
    Title ß-N-Acetylhexosaminidases HEXO1 and HEXO3 Are Responsible for the Formation of Paucimannosidic N-Glycans in Arabidopsis thaliana *
    DOI 10.1074/jbc.m110.178020
    Type Journal Article
    Author Liebminger E
    Journal Journal of Biological Chemistry
    Pages 10793-10802
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  • 2011
    Title Exo70, a subunit of the exocyst complex, interacts with SNEVhPrp19/hPso4 and is involved in pre-mRNA splicing
    DOI 10.1042/bj20110183
    Type Journal Article
    Author Dellago H
    Journal Biochemical Journal
    Pages 81-91
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  • 2011
    Title Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering
    DOI 10.1016/j.jbiotec.2011.02.011
    Type Journal Article
    Author Hackl M
    Journal Journal of Biotechnology
    Pages 62-75
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  • 2011
    Title A chloride tolerant laccase from the plant pathogen ascomycete Botrytis aclada expressed at high levels in Pichia pastoris
    DOI 10.1016/j.jbiotec.2011.11.021
    Type Journal Article
    Author Kittl R
    Journal Journal of Biotechnology
    Pages 304-314
  • 2011
    Title Rapid High Yield Production of Different Glycoforms of Ebola Virus Monoclonal Antibody
    DOI 10.1371/journal.pone.0026040
    Type Journal Article
    Author Castilho A
    Journal PLoS ONE
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  • 2011
    Title Modeling and measuring intracellular fluxes of secreted recombinant protein in Pichia pastoris with a novel 34S labeling procedure
    DOI 10.1186/1475-2859-10-47
    Type Journal Article
    Author Pfeffer M
    Journal Microbial Cell Factories
    Pages 47
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  • 2011
    Title Isomeric analysis of oligomannosidic N-glycans and their dolichol-linked precursors
    DOI 10.1093/glycob/cwr138
    Type Journal Article
    Author Pabst M
    Journal Glycobiology
    Pages 389-399
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  • 2011
    Title Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing
    DOI 10.1016/j.jbiotec.2011.09.014
    Type Journal Article
    Author Becker J
    Journal Journal of Biotechnology
    Pages 227-235
  • 2011
    Title N-Glycosylation engineering of plants for the biosynthesis of glycoproteins with bisected and branched complex N-glycans
    DOI 10.1093/glycob/cwr009
    Type Journal Article
    Author Castilho A
    Journal Glycobiology
    Pages 813-823
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  • 2013
    Title MultiBac turns sweet
    DOI 10.4161/bioe.22327
    Type Journal Article
    Author Palmberger D
    Journal Bioengineered
    Pages 78-83
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  • 2013
    Title Two-Dimensional Heterospectral Correlation Analysis of the Redox-Induced Conformational Transition in Cytochrome c Using Surface-Enhanced Raman and Infrared Absorption Spectroscopies on a Two-Layer Gold Surface
    DOI 10.1021/jp404573q
    Type Journal Article
    Author Zou C
    Journal The Journal of Physical Chemistry B
    Pages 9606-9614
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  • 2013
    Title Chinese hamster genome sequenced from sorted chromosomes
    DOI 10.1038/nbt.2645
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    Author Brinkrolf K
    Journal Nature Biotechnology
    Pages 694-695
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  • 2013
    Title Expression of human butyrylcholinesterase with an engineered glycosylation profile resembling the plasma-derived orthologue
    DOI 10.1002/biot.201300229
    Type Journal Article
    Author Schneider J
    Journal Biotechnology Journal
    Pages 501-510
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  • 2013
    Title Expression of functionally active sialylated human erythropoietin in plants
    DOI 10.1002/biot.201200363
    Type Journal Article
    Author Jez J
    Journal Biotechnology Journal
    Pages 371-382
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  • 2013
    Title Semi-rational engineering of cellobiose dehydrogenase for improved hydrogen peroxide production
    DOI 10.1186/1475-2859-12-38
    Type Journal Article
    Author Sygmund C
    Journal Microbial Cell Factories
    Pages 38
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  • 2013
    Title The S-Layer Homology Domain-Containing Protein SlhA from Paenibacillus alvei CCM 2051T Is Important for Swarming and Biofilm Formation
    DOI 10.1371/journal.pone.0076566
    Type Journal Article
    Author Janesch B
    Journal PLoS ONE
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  • 2013
    Title Pichia pastoris: protein production host and model organism for biomedical research
    DOI 10.2217/fmb.12.133
    Type Journal Article
    Author Gasser B
    Journal Future microbiology
    Pages 191-208
  • 2013
    Title Prediction of transcribed PIWI-interacting RNAs from CHO RNAseq data
    DOI 10.1016/j.jbiotec.2013.04.010
    Type Journal Article
    Author Gerstl M
    Journal Journal of Biotechnology
    Pages 51-57
  • 2013
    Title Stability assessment on a library scale: a rapid method for the evaluation of the commutability and insertion of residues in C-terminal loops of the CH3 domains of IgG1-Fc
    DOI 10.1093/protein/gzt041
    Type Journal Article
    Author Hasenhindl C
    Journal Protein Engineering, Design & Selection
    Pages 675-682
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  • 2013
    Title Protein O-glucosylation in Lactobacillus buchneri
    DOI 10.1007/s10719-013-9505-7
    Type Journal Article
    Author Anzengruber J
    Journal Glycoconjugate Journal
    Pages 117-131
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  • 2013
    Title Plant species and organ influence the structure and subcellular localization of recombinant glycoproteins
    DOI 10.1007/s11103-013-0049-9
    Type Journal Article
    Author Arcalis E
    Journal Plant Molecular Biology
    Pages 105-117
  • 2013
    Title Characterization of recombinant IgA producing CHO cell lines by qPCR
    DOI 10.1186/1753-6561-7-s6-p114
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    Author Reinhart D
    Journal BMC Proceedings
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  • 2013
    Title Inactivation of human myeloperoxidase by hydrogen peroxide
    DOI 10.1016/j.abb.2013.09.004
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    Author Paumann-Page M
    Journal Archives of Biochemistry and Biophysics
    Pages 51-62
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  • 2013
    Title Tnao38, high five and Sf9—evaluation of host–virus interactions in three different insect cell lines: baculovirus production and recombinant protein expression
    DOI 10.1007/s10529-013-1429-6
    Type Journal Article
    Author Wilde M
    Journal Biotechnology Letters
    Pages 743-749
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  • 2013
    Title Whole genome sequencing improves estimation of nuclear DNA content of Chinese hamster ovary cells
    DOI 10.1002/cyto.a.22331
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    Author Maccani A
    Journal Cytometry Part A
    Pages 893-895
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  • 2013
    Title Integrated hydrolyzation and fermentation of sugar beet pulp to bioethanol.
    DOI 10.4014/jmb.1210.10013
    Type Journal Article
    Author Rezic T
    Journal Journal of microbiology and biotechnology
    Pages 1244-52
  • 2013
    Title A Stable Bacterial Peroxidase with Novel Halogenating Activity and an Autocatalytically Linked Heme Prosthetic Group*
    DOI 10.1074/jbc.m113.477067
    Type Journal Article
    Author Auer M
    Journal Journal of Biological Chemistry
    Pages 27181-27199
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  • 2013
    Title A C4-oxidizing Lytic Polysaccharide Monooxygenase Cleaving Both Cellulose and Cello-oligosaccharides*
    DOI 10.1074/jbc.m113.530196
    Type Journal Article
    Author Isaksen T
    Journal Journal of Biological Chemistry
    Pages 2632-2642
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  • 2013
    Title Transgene copy number comparison in recombinant mammalian cell lines: critical reflection of quantitative real-time PCR evaluation
    DOI 10.1007/s10616-013-9606-y
    Type Journal Article
    Author Sommeregger W
    Journal Cytotechnology
    Pages 811-818
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  • 2013
    Title Azido derivatives of cellobiose: oxidation at C1 with cellobiose dehydrogenase from Sclerotium rolfsii
    DOI 10.1016/j.carres.2013.09.004
    Type Journal Article
    Author Mulla D
    Journal Carbohydrate Research
    Pages 86-94
  • 2013
    Title Green factories for biopharmaceuticals.
    DOI 10.2174/092986713805288879
    Type Journal Article
    Author Melnik S
    Journal Current medicinal chemistry
    Pages 1038-46
  • 2013
    Title Green Factories for Biopharmaceuticals
    DOI 10.2174/0929867311320080007
    Type Journal Article
    Author Melnik S
    Journal Current Medicinal Chemistry
    Pages 1038-1046
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    Title Subcellular accumulation and modification of pharmaceutical proteins in different plant tissues.
    DOI 10.2174/1381612811319310005
    Type Journal Article
    Author Hofbauer A
    Journal Current pharmaceutical design
    Pages 5495-502
  • 2013
    Title Engineered inorganic nanoparticles for drug delivery applications.
    DOI 10.2174/13892002113149990008
    Type Journal Article
    Author Ojea-Jiménez I
    Journal Current drug metabolism
    Pages 518-30
  • 2016
    Title Engineered IgG1-Fc – one fragment to bind them all
    DOI 10.1111/imr.12385
    Type Journal Article
    Author Lobner E
    Journal Immunological Reviews
    Pages 113-131
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  • 2016
    Title Oxidation of Phe454 in the Gating Segment Inactivates Trametes multicolor Pyranose Oxidase during Substrate Turnover
    DOI 10.1371/journal.pone.0148108
    Type Journal Article
    Author Halada P
    Journal PLOS ONE
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  • 2016
    Title The Encapsulation of Hemagglutinin in Protein Bodies Achieves a Stronger Immune Response in Mice than the Soluble Antigen
    DOI 10.3389/fpls.2016.00142
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    Author Hofbauer A
    Journal Frontiers in Plant Science
    Pages 142
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  • 2016
    Title Erratum: Vesicular Galectin-3 levels decrease with donor age and contribute to the reduced osteo-inductive potential of human plasma derived extracellular vesicles
    DOI 10.18632/aging.100917
    Type Journal Article
    Author Weilner S
    Journal Aging (Albany NY)
    Pages 1156-1157
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  • 2016
    Title Draft Genome Sequences of Three Clinical Isolates of Tannerella forsythia Isolated from Subgingival Plaque from Periodontitis Patients in the United States
    DOI 10.1128/genomea.01286-16
    Type Journal Article
    Author Stafford G
    Journal Genome Announcements
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  • 2016
    Title Uncertainty budgeting in fold change determination and implications for non-targeted metabolomics studies in model systems
    DOI 10.1039/c6an01342b
    Type Journal Article
    Author Ortmayr K
    Journal Analyst
    Pages 80-90
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    Title Comprehensive genome and epigenome characterization of CHO cells in response to evolutionary pressures and over time
    DOI 10.1002/bit.25990
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    Author Feichtinger J
    Journal Biotechnology and Bioengineering
    Pages 2241-2253
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  • 2016
    Title Tannerella forsythia strains display different cell-surface nonulosonic acids: biosynthetic pathway characterization and first insight into biological implications
    DOI 10.1093/glycob/cww129
    Type Journal Article
    Author Friedrich V
    Journal Glycobiology
    Pages 342-357
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  • 2016
    Title Globular Head-Displayed Conserved Influenza H1 Hemagglutinin Stalk Epitopes Confer Protection against Heterologous H1N1 Virus
    DOI 10.1371/journal.pone.0153579
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    Author Klausberger M
    Journal PLOS ONE
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  • 2016
    Title Electrochemical characterization of the pyranose 2-oxidase variant N593C shows a complete loss of the oxidase function with full preservation of substrate (dehydrogenase) activity
    DOI 10.1039/c6cp06009a
    Type Journal Article
    Author Brugger D
    Journal Physical Chemistry Chemical Physics
    Pages 32072-32077
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  • 2016
    Title Free-energy calculations of residue mutations in a tripeptide using various methods to overcome inefficient sampling
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    Author Graf M
    Journal Journal of Computational Chemistry
    Pages 2597-2605
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  • 2016
    Title Calculation of Relative Binding Free Energy in the Water-Filled Active Site of Oligopeptide-Binding Protein A
    DOI 10.3390/molecules21040499
    Type Journal Article
    Author Maurer M
    Journal Molecules
    Pages 499
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  • 2016
    Title Cytomegalovirus-Infected Cells Resist T Cell Mediated Killing in an HLA-Recognition Independent Manner
    DOI 10.3389/fmicb.2016.00844
    Type Journal Article
    Author Proff J
    Journal Frontiers in Microbiology
    Pages 844
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  • 2016
    Title Increasing selectivity and coverage in LC-MS based metabolome analysis
    DOI 10.1016/j.trac.2016.06.011
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    Author Ortmayr K
    Journal TrAC Trends in Analytical Chemistry
    Pages 358-366
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    Title Proteomic differences in recombinant CHO cells producing two similar antibody fragments
    DOI 10.1002/bit.25957
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    Author Sommeregger W
    Journal Biotechnology and Bioengineering
    Pages 1902-1912
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  • 2016
    Title Increasing pentose phosphate pathway flux enhances recombinant protein production in Pichia pastoris
    DOI 10.1007/s00253-016-7363-5
    Type Journal Article
    Author Nocon J
    Journal Applied Microbiology and Biotechnology
    Pages 5955-5963
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  • 2016
    Title Antibody humanization by molecular dynamics simulations—in-silico guided selection of critical backmutations
    DOI 10.1002/jmr.2527
    Type Journal Article
    Author Margreitter C
    Journal Journal of Molecular Recognition
    Pages 266-275
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