Vollantrag zu Population Genetics
Vollantrag zu Population Genetics
Christian Schlötterer
(ORCID: 0000-0003-4710-6526)
Disciplines
Biology (75%); Mathematics (25%)
Keywords
-
Speciation,
Hybridization,
Gene flow,
Selection,
Next Generation Sequenzing
It is now widely recognized that naturally occurring sequence/protein variants have important functional implications. Several genome projects were initiated to characterize the pattern of variation in natural populations. In Austria, however, the emerging importance of population genetics is not yet reflected on the teaching level. In Vienna, population genetics research and teaching is scattered over different universities and research institutions. The proposed Doktoratskolleg (DK) is aiming to change this situation. It unites theoretical population geneticists, experimental population geneticists, functional biologists, and statisticians. Through the breadth of the expertise of the participating groups we do not only offer an excellent teaching platform, but we also open the possibility for interactive research bridging the gaps between the different fields of population genetics. Hence, the proposed DK undoubtedly will provide a significant added value for research and teaching of population genetics
Consortium
-
consortium member (15.07.2010 - 14.07.2024)
-
consortium member (15.07.2010 - 14.07.2024)
-
consortium member (15.07.2010 - 14.07.2024)
-
consortium member (15.07.2010 - 14.07.2024)
-
consortium member (15.07.2010 - 14.07.2024)
-
consortium member (15.07.2010 - 14.07.2024)
-
consortium member (15.07.2010 - 14.07.2024)
Research institution(s)
- Veterinärmedizinische Universität Wien
- Universität Wien
- Gregor Mendel Institute of Molecular Plant Biology
- Universität Wien
Project participants
- Magnus Nordborg, Gregor Mendel Institute of Molecular Plant Biology , associated research partner
- Joachim Hermisson, Universität Wien , associated research partner
Research Output
- 12093 Citations
- 194 Publications
Publications
-
2013
Title The first whole genome sequence of a Fowl adenovirus B strain enables interspecies comparisons within the genus Aviadenovirus DOI 10.1016/j.vetmic.2013.05.017 Type Journal Article Author Marek A Journal Veterinary Microbiology Pages 250-256 -
2012
Title Evaluation of Different Reference Based Annotation Strategies Using RNA-Seq – A Case Study in Drososphila pseudoobscura DOI 10.1371/journal.pone.0046415 Type Journal Article Author Palmieri N Journal PLoS ONE Link Publication -
2012
Title Evolution of Eye Morphology and Rhodopsin Expression in the Drosophila melanogaster Species Subgroup DOI 10.1371/journal.pone.0037346 Type Journal Article Author Posnien N Journal PLoS ONE Link Publication -
2012
Title The allele-frequency spectrum in a decoupled Moran model with mutation, drift, and directional selection, assuming small mutation rates DOI 10.1016/j.tpb.2012.01.001 Type Journal Article Author Vogl C Journal Theoretical Population Biology Pages 197-209 Link Publication -
2012
Title The Limits to Parapatric Speciation: Dobzhansky–Muller Incompatibilities in a Continent–Island Model DOI 10.1534/genetics.111.137513 Type Journal Article Author Bank C Journal Genetics Pages 845-863 Link Publication -
2012
Title Unconstrained evolution in short introns? – An analysis of genome-wide polymorphism and divergence data from Drosophila DOI 10.1111/j.1420-9101.2012.02580.x Type Journal Article Author Clemente F Journal Journal of Evolutionary Biology Pages 1975-1990 Link Publication -
2012
Title Detecting Selective Sweeps from Pooled Next-Generation Sequencing Samples DOI 10.1093/molbev/mss090 Type Journal Article Author Boitard S Journal Molecular Biology and Evolution Pages 2177-2186 Link Publication -
2012
Title Genome-wide patterns of latitudinal differentiation among populations of Drosophila melanogaster from North America DOI 10.1111/j.1365-294x.2012.05731.x Type Journal Article Author Fabian D Journal Molecular Ecology Pages 4748-4769 Link Publication -
2019
Title Low concordance of short-term and long-term selection responses in experimental Drosophila populations DOI 10.1101/759704 Type Preprint Author Langmüller A Pages 759704 Link Publication -
2018
Title Asian horses deepen the MSY phylogeny DOI 10.1111/age.12635 Type Journal Article Author Felkel S Journal Animal Genetics Pages 90-93 -
2018
Title Evolution of longevity improves immunity in Drosophila DOI 10.1002/evl3.89 Type Journal Article Author Fabian D Journal Evolution Letters Pages 567-579 Link Publication -
2018
Title Redefining reproductive dormancy in Drosophila as a general stress response to cold temperatures DOI 10.1016/j.jinsphys.2018.04.006 Type Journal Article Author Lirakis M Journal Journal of Insect Physiology Pages 175-185 Link Publication -
2018
Title MimicrEE2: Genome-wide forward simulations of Evolve and Resequencing studies DOI 10.1371/journal.pcbi.1006413 Type Journal Article Author Vlachos C Journal PLOS Computational Biology Link Publication -
2016
Title The Interplay of Temperature and Genotype on Patterns of Alternative Splicing in Drosophila melanogaster DOI 10.1534/genetics.116.192310 Type Journal Article Author Jakšic A Journal Genetics Pages 315-325 Link Publication -
2016
Title An alternative derivation of the stationary distribution of the multivariate neutral Wright–Fisher model for low mutation rates with a view to mutation rate estimation from site frequency data DOI 10.1016/j.tpb.2016.12.001 Type Journal Article Author Schrempf D Journal Theoretical Population Biology Pages 88-94 Link Publication -
2016
Title 1,135 Genomes Reveal the Global Pattern of Polymorphism in Arabidopsis thaliana DOI 10.1016/j.cell.2016.05.063 Type Journal Article Author Consortium T Journal Cell Pages 481-491 Link Publication -
2016
Title Suitability of Different Mapping Algorithms for Genome-Wide Polymorphism Scans with Pool-Seq Data DOI 10.1534/g3.116.034488 Type Journal Article Author Kofler R Journal G3: Genes, Genomes, Genetics Pages 3507-3515 Link Publication -
2016
Title Epigenomic Diversity in a Global Collection of Arabidopsis thaliana Accessions DOI 10.1016/j.cell.2016.06.044 Type Journal Article Author Kawakatsu T Journal Cell Pages 492-505 Link Publication -
2016
Title Secondary contact and local adaptation contribute to genome-wide patterns of clinal variation in Drosophila melanogaster DOI 10.1111/mec.13455 Type Journal Article Author Bergland A Journal Molecular Ecology Pages 1157-1174 Link Publication -
2016
Title Sequencing of the genus Arabidopsis identifies a complex history of nonbifurcating speciation and abundant trans-specific polymorphism DOI 10.1038/ng.3617 Type Journal Article Author Novikova P Journal Nature Genetics Pages 1077-1082 Link Publication -
2014
Title Adaptive gene introgression after secondary contact DOI 10.1007/s00285-014-0802-y Type Journal Article Author Uecker H Journal Journal of Mathematical Biology Pages 1523-1580 Link Publication -
2014
Title Clines in quantitative traits: The role of migration patterns and selection scenarios DOI 10.1016/j.tpb.2014.10.006 Type Journal Article Author Geroldinger L Journal Theoretical Population Biology Pages 43-66 Link Publication -
2014
Title Experimental evolution reveals habitat-specific fitness dynamics among Wolbachia clades in Drosophila melanogaster DOI 10.1111/mec.12643 Type Journal Article Author Versace E Journal Molecular Ecology Pages 802-814 Link Publication -
2013
Title The consequences of gene flow for local adaptation and differentiation: a two-locus two-deme model DOI 10.1007/s00285-013-0660-z Type Journal Article Author Akerman A Journal Journal of Mathematical Biology Pages 1135-1198 Link Publication -
2013
Title Intra-Specific Regulatory Variation in Drosophila pseudoobscura DOI 10.1371/journal.pone.0083547 Type Journal Article Author Suvorov A Journal PLoS ONE Link Publication -
2012
Title Adaptation of Drosophila to a novel laboratory environment reveals temporally heterogeneous trajectories of selected alleles DOI 10.1111/j.1365-294x.2012.05673.x Type Journal Article Author Orozco-Terwengel P Journal Molecular Ecology Pages 4931-4941 Link Publication -
2012
Title Evidence for complex selection on four-fold degenerate sites in Drosophila melanogaster DOI 10.1111/jeb.12003 Type Journal Article Author Clemente F Journal Journal of Evolutionary Biology Pages 2582-2595 Link Publication -
2012
Title Estimating Empirical Codon Hidden Markov Models DOI 10.1093/molbev/mss266 Type Journal Article Author De Maio N Journal Molecular Biology and Evolution Pages 725-736 Link Publication -
2011
Title The genomic and physiological basis of life history variation in a butterfly metapopulation DOI 10.1111/j.1365-294x.2011.05078.x Type Journal Article Author Klepsatel P Journal Molecular Ecology Pages 1795-1798 Link Publication -
2011
Title Distinguishing Positive Selection From Neutral Evolution: Boosting the Performance of Summary Statistics DOI 10.1534/genetics.110.122614 Type Journal Article Author Lin K Journal Genetics Pages 229-244 Link Publication -
2011
Title CAN REINFORCEMENT COMPLETE SPECIATION? DOI 10.1111/j.1558-5646.2011.01423.x Type Journal Article Author Bank C Journal Evolution Pages 229-239 Link Publication -
2013
Title Pool-hmm: a Python program for estimating the allele frequency spectrum and detecting selective sweeps from next generation sequencing of pooled samples DOI 10.1111/1755-0998.12063 Type Journal Article Author Boitard S Journal Molecular Ecology Resources Pages 337-340 Link Publication -
2013
Title Reproductive and post-reproductive life history of wild-caught Drosophila melanogaster under laboratory conditions DOI 10.1111/jeb.12155 Type Journal Article Author Klepsatel P Journal Journal of Evolutionary Biology Pages 1508-1520 -
2013
Title Massive Habitat-Specific Genomic Response in D. melanogaster Populations during Experimental Evolution in Hot and Cold Environments DOI 10.1093/molbev/mst205 Type Journal Article Author Tobler R Journal Molecular Biology and Evolution Pages 364-375 Link Publication -
2010
Title Transcriptome analysis reveals a major impact of JAK protein tyrosine kinase 2 (Tyk2) on the expression of interferon-responsive and metabolic genes DOI 10.1186/1471-2164-11-199 Type Journal Article Author Vogl C Journal BMC Genomics Pages 199 Link Publication -
2010
Title Host Range and Specificity of the Drosophila C Virus DOI 10.1371/journal.pone.0012421 Type Journal Article Author Kapun M Journal PLoS ONE Link Publication -
2010
Title Conservation, loss, and redeployment of Wnt ligands in protostomes: implications for understanding the evolution of segment formation DOI 10.1186/1471-2148-10-374 Type Journal Article Author Janssen R Journal BMC Evolutionary Biology Pages 374 Link Publication -
2010
Title The Next Generation of Molecular Markers From Massively Parallel Sequencing of Pooled DNA Samples DOI 10.1534/genetics.110.114397 Type Journal Article Author Futschik A Journal Genetics Pages 207-218 Link Publication -
2021
Title Highly parallel genomic selection response in replicated Drosophila melanogaster populations with reduced genetic variation DOI 10.1101/2021.04.06.438598 Type Preprint Author Claire B Pages 2021.04.06.438598 Link Publication -
2023
Title Evolution of Metabolome and Transcriptome Supports a Hierarchical Organization of Adaptive Traits DOI 10.1093/gbe/evad098 Type Journal Article Author Lai W Journal Genome Biology and Evolution Link Publication -
2023
Title Effects of larval crowding on the transcriptome of Drosophila simulans DOI 10.1111/eva.13592 Type Journal Article Author Buchner S Journal Evolutionary Applications Pages 1671-1679 Link Publication -
2021
Title Evolutionary dynamics of piRNA clusters in Drosophila DOI 10.1101/2021.08.20.457083 Type Preprint Author Wierzbicki F Pages 2021.08.20.457083 Link Publication -
2021
Title Recurrent allopolyploidization events diversify eco-physiological traits in marsh orchids DOI 10.1101/2021.08.28.458039 Type Preprint Author Wolfe T Pages 2021.08.28.458039 Link Publication -
2021
Title Evolution of phenotypic variance in response to a novel hot environment DOI 10.1101/2021.01.19.427270 Type Preprint Author Lai W Pages 2021.01.19.427270 Link Publication -
2024
Title Small RNAs regulation and genomic harmony: insights into allopolyploid evolution in marsh orchids (Dactylorhiza) DOI 10.1101/2024.11.29.626004 Type Preprint Author Eriksson M Pages 2024.11.29.626004 Link Publication -
2024
Title The global spread of Oriental Horses in the past 1,500 years through the lens of the Y chromosome DOI 10.1073/pnas.2414408121 Type Journal Article Author Radovic L Journal Proceedings of the National Academy of Sciences Link Publication -
2024
Title Purifying Selection Shapes the Dynamics of P-element Invasion in Drosophila simulans Populations DOI 10.1101/2024.12.17.628872 Type Preprint Author Langmüller A Pages 2024.12.17.628872 Link Publication -
2024
Title Inferences about the population history of Rangifer tarandus from Y chromosome and mtDNA phylogenies DOI 10.1002/ece3.11573 Type Journal Article Author Bozlak E Journal Ecology and Evolution Link Publication -
2024
Title From whole bodies to single cells: A guide to transcriptomic approaches for ecology and evolutionary biology DOI 10.1111/mec.17382 Type Journal Article Author Hoedjes K Journal Molecular Ecology Link Publication -
2024
Title Pleiotropy increases parallel selection signatures during adaptation from standing genetic variation DOI 10.1101/2024.08.06.606803 Type Preprint Author Lai W Pages 2024.08.06.606803 Link Publication -
2023
Title Non-additive effects between genotypes: Implications for competitive fitness assays DOI 10.1002/ece3.10713 Type Journal Article Author Xiao C Journal Ecology and Evolution Link Publication -
2023
Title Recurrent allopolyploidizations diversify ecophysiological traits in marsh orchids (Dactylorhiza majalis s.l.) DOI 10.1111/mec.17070 Type Journal Article Author Wolfe T Journal Molecular Ecology Pages 4777-4790 Link Publication -
2023
Title The composition of piRNA clusters in Drosophila melanogaster deviates from expectations under the trap model DOI 10.1186/s12915-023-01727-7 Type Journal Article Author Wierzbicki F Journal BMC Biology Pages 224 Link Publication -
2023
Title Haplotype based testing for a better understanding of the selective architecture DOI 10.1186/s12859-023-05437-3 Type Journal Article Author Chen H Journal BMC Bioinformatics Pages 322 Link Publication -
2023
Title The genomic distribution of transposable elements is driven by spatially variable purifying selection DOI 10.1093/nar/gkad635 Type Journal Article Author Langmüller A Journal Nucleic Acids Research Pages 9203-9213 Link Publication -
2023
Title Purifying selection against spurious splicing signals contributes to the base composition evolution of the polypyrimidine tract DOI 10.1111/jeb.14205 Type Journal Article Author Yildirim B Journal Journal of Evolutionary Biology Pages 1295-1312 Link Publication -
2023
Title Unraveling the Molecular Basis of Stabilizing Selection by Experimental Evolution DOI 10.1093/gbe/evad220 Type Journal Article Author Schlötterer C Journal Genome Biology and Evolution Link Publication -
2023
Title Inference of Genomic Landscapes using Ordered Hidden Markov Models with Emission Densities (oHMMed) DOI 10.1101/2023.06.26.546495 Type Preprint Author Vogl C Pages 2023.06.26.546495 Link Publication -
2023
Title Refining the evolutionary tree of the horse Y chromosome DOI 10.1038/s41598-023-35539-0 Type Journal Article Author Bozlak E Journal Scientific Reports Pages 8954 Link Publication -
2020
Title Loss of genetic variation in the two-locus multiallelic haploid model DOI 10.1016/j.tpb.2020.10.001 Type Journal Article Author Pontz M Journal Theoretical Population Biology Pages 12-21 Link Publication -
2020
Title Reconstructing the Invasion Route of the P-Element in Drosophila melanogaster Using Extant Population Samples DOI 10.1093/gbe/evaa190 Type Journal Article Author Weilguny L Journal Genome Biology and Evolution Pages 2139-2152 Link Publication -
2020
Title Arabidopsis shoot stem cells display dynamic transcription and DNA methylation patterns DOI 10.15252/embj.2019103667 Type Journal Article Author Gutzat R Journal The EMBO Journal Link Publication -
2020
Title Parallel gene expression evolution in natural and laboratory evolved populations DOI 10.1111/mec.15649 Type Journal Article Author Hsu S Journal Molecular Ecology Pages 884-894 Link Publication -
2020
Title Long-Term Dynamics Among Wolbachia Strains During Thermal Adaptation of Their Drosophila melanogaster Hosts DOI 10.3389/fgene.2020.00482 Type Journal Article Author Mazzucco R Journal Frontiers in Genetics Pages 482 Link Publication -
2021
Title Novel quality metrics allow identifying and generating high-quality assemblies of piRNA clusters DOI 10.1111/1755-0998.13455 Type Journal Article Author Wierzbicki F Journal Molecular Ecology Resources Pages 102-121 Link Publication -
2020
Title Current research frontiers in plant epigenetics: an introduction to a Virtual Issue DOI 10.1111/nph.16493 Type Journal Article Author Eriksson M Journal New Phytologist Pages 285-288 Link Publication -
2020
Title Generating high quality assemblies for genomic analysis of transposable elements DOI 10.1101/2020.03.27.011312 Type Preprint Author Wierzbicki F Pages 2020.03.27.011312 Link Publication -
2020
Title Transcription-coupled repair in Drosophila melanogaster is independent of the mismatch repair pathway DOI 10.1101/2020.04.07.029033 Type Preprint Author Törmä L Pages 2020.04.07.029033 Link Publication -
2020
Title Tirant Stealthily Invaded Natural Drosophila melanogaster Populations during the Last Century DOI 10.1093/molbev/msaa308 Type Journal Article Author Schwarz F Journal Molecular Biology and Evolution Pages 1482-1497 Link Publication -
2019
Title Polygenic adaptation: From sweeps to subtle frequency shifts DOI 10.1371/journal.pgen.1008035 Type Journal Article Author Höllinger I Journal PLOS Genetics Link Publication -
2019
Title Benchmarking software tools for detecting and quantifying selection in Evolve and Resequencing studies DOI 10.1101/641852 Type Preprint Author Vlachos C Pages 641852 Link Publication -
2019
Title A First Y-Chromosomal Haplotype Network to Investigate Male-Driven Population Dynamics in Domestic and Wild Bactrian Camels DOI 10.3389/fgene.2019.00423 Type Journal Article Author Felkel S Journal Frontiers in Genetics Pages 423 Link Publication -
2019
Title Does Adaptive Protein Evolution Proceed by Large or Small Steps at the Amino Acid Level? DOI 10.1093/molbev/msz033 Type Journal Article Author Bergman J Journal Molecular Biology and Evolution Pages 990-998 Link Publication -
2019
Title Maximum Likelihood Estimation of Fitness Components in Experimental Evolution DOI 10.1534/genetics.118.301893 Type Journal Article Author Liu J Journal Genetics Pages 1005-1017 Link Publication -
2019
Title LDJump: Estimating variable recombination rates from population genetic data DOI 10.1111/1755-0998.12994 Type Journal Article Author Hermann P Journal Molecular Ecology Resources Pages 623-638 Link Publication -
2019
Title Genetic redundancy fuels polygenic adaptation in Drosophila DOI 10.1371/journal.pbio.3000128 Type Journal Article Author Barghi N Journal PLOS Biology Link Publication -
2019
Title A 24 h Age Difference Causes Twice as Much Gene Expression Divergence as 100 Generations of Adaptation to a Novel Environment DOI 10.3390/genes10020089 Type Journal Article Author Hsu S Journal Genes Pages 89 Link Publication -
2019
Title The comparative genomics and complex population history of Papio baboons DOI 10.1126/sciadv.aau6947 Type Journal Article Author Rogers J Journal Science Advances Link Publication -
2019
Title Does experimental evolution produce better biological control agents? A critical review of the evidence DOI 10.1111/eea.12815 Type Journal Article Author Lirakis M Journal Entomologia Experimentalis et Applicata Pages 584-597 Link Publication -
2019
Title Secondary evolve and re-sequencing: an experimental confirmation of putative selection targets without phenotyping DOI 10.1101/722488 Type Preprint Author Burny C Pages 722488 Link Publication -
2019
Title A clinal polymorphism in the insulin signaling transcription factor foxo contributes to life-history adaptation in Drosophila* DOI 10.1111/evo.13759 Type Journal Article Author Durmaz E Journal Evolution Pages 1774-1792 Link Publication -
2019
Title The Aquilegia genome reveals a hybrid origin of core eudicots DOI 10.1186/s13059-019-1888-8 Type Journal Article Author Aköz G Journal Genome Biology Pages 256 Link Publication -
2019
Title The horse Y chromosome as an informative marker for tracing sire lines DOI 10.1038/s41598-019-42640-w Type Journal Article Author Felkel S Journal Scientific Reports Pages 6095 Link Publication -
2019
Title DNA Motifs Are Not General Predictors of Recombination in Two Drosophila Sister Species DOI 10.1093/gbe/evz082 Type Journal Article Author Howie J Journal Genome Biology and Evolution Pages 1345-1357 Link Publication -
2022
Title Parallel adaptation to lower altitudes is associated with enhanced plasticity in Heliosperma pusillum (Caryophyllaceae) DOI 10.1101/2022.05.28.493825 Type Preprint Author Szukala A Pages 2022.05.28.493825 Link Publication -
2022
Title Natural variation in Drosophila shows weak pleiotropic effects DOI 10.1186/s13059-022-02680-4 Type Journal Article Author Christodoulaki E Journal Genome Biology Pages 116 Link Publication -
2022
Title Pool-GWAS on reproductive dormancy in Drosophila simulans suggests a polygenic architecture DOI 10.1093/g3journal/jkac027 Type Journal Article Author Lirakis M Journal G3 Link Publication -
2022
Title Purifying selection against spurious splicing signals contributes to the base composition evolution of the polypyrimidine tract DOI 10.1101/2022.01.29.478184 Type Preprint Author Yildirim B Pages 2022.01.29.478184 Link Publication -
2022
Title Y-Chromosomal Insights into Breeding History and Sire Line Genealogies of Arabian Horses DOI 10.3390/genes13020229 Type Journal Article Author Remer V Journal Genes Pages 229 Link Publication -
2022
Title A homing suppression gene drive with multiplexed gRNAs maintains high drive conversion efficiency and avoids functional resistance alleles DOI 10.1093/g3journal/jkac081 Type Journal Article Author Yang E Journal G3 Link Publication -
2019
Title Benchmarking software tools for detecting and quantifying selection in evolve and resequencing studies DOI 10.1186/s13059-019-1770-8 Type Journal Article Author Vlachos C Journal Genome Biology Pages 169 Link Publication -
2019
Title Optimizing the Power to Identify the Genetic Basis of Complex Traits with Evolve and Resequence Studies DOI 10.1093/molbev/msz183 Type Journal Article Author Vlachos C Journal Molecular Biology and Evolution Pages 2890-2905 Link Publication -
2021
Title Single-particle tracking photoactivated localization microscopy of membrane proteins in living plant tissues DOI 10.1038/s41596-020-00471-4 Type Journal Article Author Bayle V Journal Nature Protocols Pages 1600-1628 -
2021
Title Highly Parallel Genomic Selection Response in Replicated Drosophila melanogaster Populations with Reduced Genetic Variation DOI 10.1093/gbe/evab239 Type Journal Article Author Burny C Journal Genome Biology and Evolution Link Publication -
2021
Title Taxon-specific or universal? Using target capture to study the evolutionary history of rapid radiations DOI 10.1101/2021.05.20.444989 Type Preprint Author Yardeni G Pages 2021.05.20.444989 Link Publication -
2021
Title 38??Y chromosome genetic variation and deep genealogies provide new insights on Lipizzan sire lines DOI 10.1016/j.jevs.2021.103501 Type Journal Article Author Radovic L Journal Journal of Equine Veterinary Science Pages 103501 -
2021
Title Fine Mapping without Phenotyping: Identification of Selection Targets in Secondary Evolve and Resequence Experiments DOI 10.1093/gbe/evab154 Type Journal Article Author Langmüller A Journal Genome Biology and Evolution Link Publication -
2021
Title Evolution of phenotypic variance in response to a novel hot environment DOI 10.1111/mec.16274 Type Journal Article Author Lai W Journal Molecular Ecology Pages 934-945 Link Publication -
2021
Title Two different adaptive speciation mechanisms operate during adaptation to a novel hot environment DOI 10.1101/2021.11.08.467720 Type Preprint Author Hsu S Pages 2021.11.08.467720 Link Publication -
2021
Title Genome-wide selection signatures reveal widespread synergistic effects of culture conditions and temperature stress in Drosophila melanogaster DOI 10.1101/2021.11.09.467935 Type Preprint Author Claire B Pages 2021.11.09.467935 Link Publication -
2021
Title Drivers of genomic landscapes of differentiation across Populus divergence gradient DOI 10.1101/2021.08.26.457771 Type Preprint Author Shang H Pages 2021.08.26.457771 Link Publication -
2021
Title The Contribution of Evolutionary Game Theory to Understanding and Treating Cancer DOI 10.1007/s13235-021-00397-w Type Journal Article Author Wölfl B Journal Dynamic Games and Applications Pages 313-342 Link Publication -
2021
Title Evolution of phenotypic variance provides insights into the genetic basis of adaptation DOI 10.1101/2021.01.19.427260 Type Preprint Author Lai W Pages 2021.01.19.427260 Link Publication -
2021
Title Fine mapping without phenotyping: Identification of selection targets in secondary Evolve and Resequence experiments DOI 10.1101/2021.01.27.428395 Type Preprint Author Langmüller A Pages 2021.01.27.428395 Link Publication -
2021
Title Multiple haplotype reconstruction from allele frequency data DOI 10.1038/s43588-021-00056-5 Type Journal Article Author Pelizzola M Journal Nature Computational Science Pages 262-271 Link Publication -
2021
Title A nearly-neutral biallelic Moran model with biased mutation and linear and quadratic selection DOI 10.1016/j.tpb.2021.03.003 Type Journal Article Author Vogl C Journal Theoretical Population Biology Pages 1-17 Link Publication -
2021
Title Fitness effects of CRISPR endonucleases in Drosophila melanogaster populations DOI 10.1101/2021.05.13.444039 Type Preprint Author Langmüller A Pages 2021.05.13.444039 Link Publication -
2022
Title Parallel reduction in flowering time from de novo mutations enable evolutionary rescue in colonizing lineages DOI 10.1038/s41467-022-28800-z Type Journal Article Author Fulgione A Journal Nature Communications Pages 1461 Link Publication -
2022
Title Genome-wide selection signatures reveal widespread synergistic effects of two different stressors in Drosophila melanogaster DOI 10.1098/rspb.2022.1857 Type Journal Article Author Burny C Journal Proceedings of the Royal Society B Pages 20221857 Link Publication -
2022
Title Polygenic routes lead to parallel altitudinal adaptation in Heliosperma pusillum (Caryophyllaceae) DOI 10.1111/mec.16393 Type Journal Article Author Szukala A Journal Molecular Ecology Pages 1832-1847 Link Publication -
2009
Title Hidden Markov Models in Biology DOI 10.1007/978-1-60327-241-4_14 Type Book Chapter Author Vogl C Publisher Springer Nature Pages 241-253 -
2017
Title ReadTools: A universal toolkit for handling sequence data from different sequencing platforms DOI 10.1111/1755-0998.12741 Type Journal Article Author Gómez-Sánchez D Journal Molecular Ecology Resources Pages 676-680 -
2017
Title Genome Sequencing Reveals the Origin of the Allotetraploid Arabidopsis suecica DOI 10.1093/molbev/msw299 Type Journal Article Author Novikova P Journal Molecular Biology and Evolution Pages 957-968 Link Publication -
2017
Title Exchange of genetic information between therian X and Y chromosome gametologs in old evolutionary strata DOI 10.1002/ece3.3278 Type Journal Article Author Peneder P Journal Ecology and Evolution Pages 8478-8487 Link Publication -
2017
Title Drosophila simulans: A Species with Improved Resolution in Evolve and Resequence Studies DOI 10.1534/g3.117.043349 Type Journal Article Author Barghi N Journal G3: Genes, Genomes, Genetics Pages 2337-2343 Link Publication -
2017
Title Evolutionary dynamics in the two-locus two-allele model with weak selection DOI 10.1007/s00285-017-1140-7 Type Journal Article Author Pontz M Journal Journal of Mathematical Biology Pages 151-203 Link Publication -
2017
Title Approximate maximum likelihood estimation for population genetic inference DOI 10.1515/sagmb-2017-0016 Type Journal Article Author Bertl J Journal Statistical Applications in Genetics and Molecular Biology Pages 291-312 Link Publication -
2018
Title Contesting the evidence for non-adaptive plasticity DOI 10.1038/nature25496 Type Journal Article Author Mallard F Journal Nature -
2017
Title On the post-glacial spread of human commensal Arabidopsis thaliana DOI 10.1038/ncomms14458 Type Journal Article Author Lee C Journal Nature Communications Pages 14458 Link Publication -
2017
Title African genomes illuminate the early history and transition to selfing in Arabidopsis thaliana DOI 10.1073/pnas.1616736114 Type Journal Article Author Durvasula A Journal Proceedings of the National Academy of Sciences Pages 5213-5218 Link Publication -
2017
Title High rate of translocation-based gene birth on the Drosophila Y chromosome DOI 10.1073/pnas.1706502114 Type Journal Article Author Tobler R Journal Proceedings of the National Academy of Sciences Pages 11721-11726 Link Publication -
2017
Title Bounds to parapatric speciation: A Dobzhansky–Muller incompatibility model involving autosomes, X chromosomes, and mitochondria DOI 10.1111/evo.13223 Type Journal Article Author Höllinger I Journal Evolution Pages 1366-1380 Link Publication -
2017
Title Transcription-Associated Compositional Skews in Drosophila Genes DOI 10.1093/gbe/evx200 Type Journal Article Author Bergman J Journal Genome Biology and Evolution Pages 269-275 Link Publication -
2017
Title A simple genetic basis of adaptation to a novel thermal environment results in complex metabolic rewiring in Drosophila DOI 10.1101/174011 Type Preprint Author Mallard F Pages 174011 Link Publication -
2017
Title Unstable Inheritance of 45S rRNA Genes in Arabidopsis thaliana DOI 10.1534/g3.117.040204 Type Journal Article Author Rabanal F Journal G3: Genes, Genomes, Genetics Pages 1201-1209 Link Publication -
2017
Title Inference in population genetics using forward and backward, discrete and continuous time processes DOI 10.1016/j.jtbi.2017.12.008 Type Journal Article Author Bergman J Journal Journal of Theoretical Biology Pages 166-180 Link Publication -
2017
Title Verification of Arabidopsis stock collections using SNPmatch, a tool for genotyping high-plexed samples DOI 10.1038/sdata.2017.184 Type Journal Article Author Pisupati R Journal Scientific Data Pages 170184 Link Publication -
2017
Title Plant genetic effects on microbial hubs impact fitness across field trials DOI 10.1101/181198 Type Preprint Author Brachi B Pages 181198 Link Publication -
2017
Title Quantifying Selection with Pool-Seq Time Series Data DOI 10.1093/molbev/msx225 Type Journal Article Author Taus T Journal Molecular Biology and Evolution Pages 3023-3034 Link Publication -
2017
Title Regulation of transposable elements: Interplay between TE-encoded regulatory sequences and host-specific trans-acting factors in Drosophila melanogaster DOI 10.1111/mec.14259 Type Journal Article Author Jakšic A Journal Molecular Ecology Pages 5149-5159 -
2017
Title Madeiran Arabidopsis thaliana Reveals Ancient Long-Range Colonization and Clarifies Demography in Eurasia DOI 10.1093/molbev/msx300 Type Journal Article Author Fulgione A Journal Molecular Biology and Evolution Pages 564-574 Link Publication -
2014
Title Combining experimental evolution with next-generation sequencing: a powerful tool to study adaptation from standing genetic variation DOI 10.1038/hdy.2014.86 Type Journal Article Author Schlötterer C Journal Heredity Pages 431-440 Link Publication -
2014
Title SNP2GO: Functional Analysis of Genome-Wide Association Studies DOI 10.1534/genetics.113.160341 Type Journal Article Author Szkiba D Journal Genetics Pages 285-289 Link Publication -
2014
Title A two-locus model of spatially varying stabilizing or directional selection on a quantitative trait DOI 10.1016/j.tpb.2014.03.002 Type Journal Article Author Geroldinger L Journal Theoretical Population Biology Pages 10-41 Link Publication -
2014
Title Patterns of Linkage Disequilibrium and Long Range Hitchhiking in Evolving Experimental Drosophila melanogaster Populations DOI 10.1093/molbev/msu320 Type Journal Article Author Franssen S Journal Molecular Biology and Evolution Pages 495-509 Link Publication -
2014
Title The consequences of dominance and gene flow for local adaptation and differentiation at two linked loci DOI 10.1016/j.tpb.2014.04.001 Type Journal Article Author Akerman A Journal Theoretical Population Biology Pages 42-62 Link Publication -
2014
Title Pool and conquer: new tricks for (c)old problems DOI 10.1111/mec.12685 Type Journal Article Author Navarro A Journal Molecular Ecology Pages 1653-1655 Link Publication -
2014
Title Keeping It Local: Evidence for Positive Selection in Swedish Arabidopsis thaliana DOI 10.1093/molbev/msu247 Type Journal Article Author Huber C Journal Molecular Biology and Evolution Pages 3026-3039 Link Publication -
2014
Title The life cycle of Drosophila orphan genes DOI 10.7554/elife.01311 Type Journal Article Author Palmieri N Journal eLife Link Publication -
2017
Title Adaptive sequence evolution is driven by biotic stress in a pair of orchid species (Dactylorhiza) with distinct ecological optima DOI 10.1111/mec.14123 Type Journal Article Author Balao F Journal Molecular Ecology Pages 3649-3662 Link Publication -
2016
Title The Footprint of Polygenic Adaptation on Stress-Responsive Cis-Regulatory Divergence in the Arabidopsis Genus DOI 10.1093/molbev/msw096 Type Journal Article Author He F Journal Molecular Biology and Evolution Pages 2088-2101 Link Publication -
2016
Title Suitability of different mapping algorithms for genome-wide polymorphism scans with Pool-Seq data DOI 10.1101/052845 Type Preprint Author Kofler R Pages 052845 Link Publication -
2016
Title Improved Versions of Common Estimators of the Recombination Rate DOI 10.1089/cmb.2016.0039 Type Journal Article Author Gärtner K Journal Journal of Computational Biology Pages 756-768 Link Publication -
2016
Title Estimating the Effective Population Size from Temporal Allele Frequency Changes in Experimental Evolution DOI 10.1534/genetics.116.191197 Type Journal Article Author Jónás Á Journal Genetics Pages 723-735 Link Publication -
2015
Title Detecting recent selective sweeps while controlling for mutation rate and background selection DOI 10.1101/018697 Type Preprint Author Huber C Pages 018697 Link Publication -
2015
Title PoMo: An Allele Frequency-Based Approach for Species Tree Estimation DOI 10.1093/sysbio/syv048 Type Journal Article Author De Maio N Journal Systematic Biology Pages 1018-1031 Link Publication -
2015
Title Genes from scratch – the evolutionary fate of de novo genes DOI 10.1016/j.tig.2015.02.007 Type Journal Article Author Schlötterer C Journal Trends in Genetics Pages 215-219 Link Publication -
2020
Title Evolution of strong reproductive isolation in plants: broad-scale patterns and lessons from a perennial model group. DOI 10.1098/rstb.2019.0544 Type Journal Article Author Shang H Journal Philosophical transactions of the Royal Society of London. Series B, Biological sciences Pages 20190544 Link Publication -
2020
Title Next-generation biological control: the need for integrating genetics and genomics DOI 10.1111/brv.12641 Type Journal Article Author Leung K Journal Biological Reviews Pages 1838-1854 Link Publication -
2020
Title Low concordance of short-term and long-term selection responses in experimental Drosophila populations DOI 10.1111/mec.15579 Type Journal Article Author Langmüller A Journal Molecular Ecology Pages 3466-3475 Link Publication -
2020
Title Maximum likelihood estimators for scaled mutation rates in an equilibrium mutation–drift model DOI 10.1016/j.tpb.2020.06.001 Type Journal Article Author Vogl C Journal Theoretical Population Biology Pages 106-118 -
2020
Title VolcanoFinder: Genomic scans for adaptive introgression DOI 10.1371/journal.pgen.1008867 Type Journal Article Author Setter D Journal PLOS Genetics Link Publication -
2020
Title Tirant stealthily invaded natural Drosophila melanogaster populations during the last century DOI 10.1101/2020.06.10.144378 Type Preprint Author Schwarz F Pages 2020.06.10.144378 Link Publication -
2020
Title Fitness effects for Ace insecticide resistance mutations are determined by ambient temperature DOI 10.1186/s12915-020-00882-5 Type Journal Article Author Langmüller A Journal BMC Biology Pages 157 Link Publication -
2020
Title Secondary Evolve and Resequencing: An Experimental Confirmation of Putative Selection Targets without Phenotyping DOI 10.1093/gbe/evaa036 Type Journal Article Author Burny C Journal Genome Biology and Evolution Pages 151-159 Link Publication -
2020
Title Loss of genetic variation in the two-locus multiallelic haploid model DOI 10.1101/2020.03.07.981852 Type Preprint Author Pontz M Pages 2020.03.07.981852 Link Publication -
2020
Title Rapid sex-specific adaptation to high temperature in Drosophila DOI 10.7554/elife.53237 Type Journal Article Author Hsu S Journal eLife Link Publication -
2020
Title Neuronal Function and Dopamine Signaling Evolve at High Temperature in Drosophila DOI 10.1093/molbev/msaa116 Type Journal Article Author Jakšic A Journal Molecular Biology and Evolution Pages 2630-2640 Link Publication -
2020
Title Modifying the Chi-square and the CMH test for population genetic inference: Adapting to overdispersion DOI 10.1214/19-aoas1301 Type Journal Article Author Spitzer K Journal The Annals of Applied Statistics Pages 202-220 Link Publication -
2020
Title Reversed sex-biased mutation rates for indels and base substitutions in Drosophila melanogaster DOI 10.1101/2020.04.08.031336 Type Preprint Author Törmä L Pages 2020.04.08.031336 Link Publication -
2015
Title Spatially varying selection shapes life history clines among populations of Drosophila melanogaster from sub-Saharan Africa DOI 10.1111/jeb.12607 Type Journal Article Author Fabian D Journal Journal of Evolutionary Biology Pages 826-840 Link Publication -
2015
Title Inference of directional selection and mutation parameters assuming equilibrium DOI 10.1016/j.tpb.2015.10.003 Type Journal Article Author Vogl C Journal Theoretical Population Biology Pages 71-82 -
2015
Title Parallel trait adaptation across opposing thermal environments in experimental Drosophila melanogaster populations DOI 10.1111/evo.12705 Type Journal Article Author Tobler R Journal Evolution Pages 1745-1759 Link Publication -
2014
Title SIMILARITIES AND DIFFERENCES IN ALTITUDINAL VERSUS LATITUDINAL VARIATION FOR MORPHOLOGICAL TRAITS IN DROSOPHILA MELANOGASTER DOI 10.1111/evo.12351 Type Journal Article Author Klepsatel P Journal Evolution Pages 1385-1398 Link Publication -
2014
Title Sequencing pools of individuals — mining genome-wide polymorphism data without big funding DOI 10.1038/nrg3803 Type Journal Article Author Schlötterer C Journal Nature Reviews Genetics Pages 749-763 -
2018
Title Ancient genomes revisit the ancestry of domestic and Przewalski’s horses DOI 10.1126/science.aao3297 Type Journal Article Author Gaunitz C Journal Science Pages 111-114 Link Publication -
2015
Title Detecting recent selective sweeps while controlling for mutation rate and background selection DOI 10.1111/mec.13351 Type Journal Article Author Huber C Journal Molecular Ecology Pages 142-156 Link Publication -
2015
Title The impact of library preparation protocols on the consistency of allele frequency estimates in Pool-Seq data DOI 10.1111/1755-0998.12432 Type Journal Article Author Kofler R Journal Molecular Ecology Resources Pages 118-122 Link Publication -
2015
Title Gaussian process test for high-throughput sequencing time series: application to experimental evolution DOI 10.1093/bioinformatics/btv014 Type Journal Article Author Topa H Journal Bioinformatics Pages 1762-1770 Link Publication -
2018
Title Molecular dissection of a natural transposable element invasion DOI 10.1101/gr.228627.117 Type Journal Article Author Kofler R Journal Genome Research Pages 824-835 Link Publication -
2018
Title A simple genetic basis of adaptation to a novel thermal environment results in complex metabolic rewiring in Drosophila DOI 10.1186/s13059-018-1503-4 Type Journal Article Author Mallard F Journal Genome Biology Pages 119 Link Publication -
2018
Title DNA motifs are not general predictors of recombination in two Drosophila sister species DOI 10.1101/453639 Type Preprint Author Howie J Pages 453639 Link Publication -
2018
Title The Aquilegia genome provides insight into adaptive radiation and reveals an extraordinarily polymorphic chromosome with a unique history DOI 10.7554/elife.36426 Type Journal Article Author Filiault D Journal eLife Link Publication -
2018
Title Can secondary contact following range expansion be distinguished from barriers to gene flow? DOI 10.7717/peerj.5325 Type Journal Article Author Bertl J Journal PeerJ Link Publication -
2018
Title An omnibus test for the global null hypothesis DOI 10.1177/0962280218768326 Type Journal Article Author Futschik A Journal Statistical Methods in Medical Research Pages 2292-2304 Link Publication -
2010
Title Steroid hormone regulation of C. elegans and Drosophila aging and life history DOI 10.1016/j.exger.2010.08.021 Type Journal Article Author Gáliková M Journal Experimental Gerontology Pages 141-147 Link Publication -
2009
Title Detecting Selective Sweeps: A New Approach Based on Hidden Markov Models DOI 10.1534/genetics.108.100032 Type Journal Article Author Boitard S Journal Genetics Pages 1567-1578 Link Publication -
2011
Title PoPoolation: A Toolbox for Population Genetic Analysis of Next Generation Sequencing Data from Pooled Individuals DOI 10.1371/journal.pone.0015925 Type Journal Article Author Kofler R Journal PLoS ONE Link Publication -
2011
Title The effects of linkage and gene flow on local adaptation: A two-locus continent–island model DOI 10.1016/j.tpb.2011.07.002 Type Journal Article Author Bürger R Journal Theoretical Population Biology Pages 272-288 Link Publication -
2013
Title Genetic and developmental analysis of differences in eye and face morphology between Drosophila simulans and Drosophila mauritiana DOI 10.1111/ede.12027 Type Journal Article Author Arif S Journal Evolution & Development Pages 257-267 Link Publication -
2013
Title A Guide for the Design of Evolve and Resequencing Studies DOI 10.1093/molbev/mst221 Type Journal Article Author Kofler R Journal Molecular Biology and Evolution Pages 474-483 Link Publication -
2013
Title Linking Great Apes Genome Evolution across Time Scales Using Polymorphism-Aware Phylogenetic Models DOI 10.1093/molbev/mst131 Type Journal Article Author De Maio N Journal Molecular Biology and Evolution Pages 2249-2262 Link Publication -
2013
Title A Genome-Wide, Fine-Scale Map of Natural Pigmentation Variation in Drosophila melanogaster DOI 10.1371/journal.pgen.1003534 Type Journal Article Author Bastide H Journal PLoS Genetics Link Publication -
2013
Title VARIATION IN THERMAL PERFORMANCE AND REACTION NORMS AMONG POPULATIONS OF DROSOPHILA MELANOGASTER DOI 10.1111/evo.12221 Type Journal Article Author Klepsatel P Journal Evolution Pages 3573-3587 -
2013
Title Inference of chromosomal inversion dynamics from Pool-Seq data in natural and laboratory populations of Drosophila melanogaster DOI 10.1111/mec.12594 Type Journal Article Author Kapun M Journal Molecular Ecology Pages 1813-1827 Link Publication -
2013
Title Allelic imbalance metre (Allim), a new tool for measuring allele-specific gene expression with RNA-seq data DOI 10.1111/1755-0998.12110 Type Journal Article Author Pandey R Journal Molecular Ecology Resources Pages 740-745 Link Publication -
2013
Title Evolution of mir-92a Underlies Natural Morphological Variation in Drosophila melanogaster DOI 10.1016/j.cub.2013.02.018 Type Journal Article Author Arif S Journal Current Biology Pages 523-528 Link Publication -
2013
Title Massive genomic variation and strong selection in Arabidopsis thaliana lines from Sweden DOI 10.1038/ng.2678 Type Journal Article Author Long Q Journal Nature Genetics Pages 884-890 Link Publication -
2013
Title A Perspective on Micro-Evo-Devo: Progress and Potential DOI 10.1534/genetics.113.156463 Type Journal Article Author Nunes M Journal Genetics Pages 625-634 Link Publication -
2016
Title Erratum: Combining experimental evolution with next-generation sequencing: a powerful tool to study adaptation from standing genetic variation DOI 10.1038/hdy.2015.85 Type Journal Article Author Schlötterer C Journal Heredity Pages 248-248 Link Publication -
2016
Title Reversible polymorphism-aware phylogenetic models and their application to tree inference DOI 10.1016/j.jtbi.2016.07.042 Type Journal Article Author Schrempf D Journal Journal of Theoretical Biology Pages 362-370 Link Publication -
2016
Title Computation of the Likelihood of Joint Site Frequency Spectra Using Orthogonal Polynomials DOI 10.3390/computation4010006 Type Journal Article Author Vogl C Journal Computation Pages 6 Link Publication -
2016
Title Estimating effective population size from temporal allele frequency changes in experimental evolution DOI 10.1101/051854 Type Preprint Author Jónás Á Pages 051854 Link Publication -
2016
Title Ancestral population reconstitution from isofemale lines as a tool for experimental evolution DOI 10.1002/ece3.2402 Type Journal Article Author Nouhaud P Journal Ecology and Evolution Pages 7169-7175 Link Publication