Vollantrag zu Chromosome Dynamics
Vollantrag zu Chromosome Dynamics
Disciplines
Biology (100%)
Keywords
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Chromosomes,
Mitosis,
DNA Repair,
Kinetochores,
Centrosomes,
Meiosis
Genetic information, the blueprint for any living organism, is encoded by DNA. In higher eukaryotes, the DNA resides in the nucleus of a cell and is partitioned into linear units called chromosomes. The maintenance of genetic information and its faithful transmission from one generation to the next crucially depends on intact chromosomes. Failure to protect DNA from deterioration, impaired DNA repair or missegregation of chromosomes during cell division seriously compromises the fitness of any organism. Understanding the molecular basis of chromosome maintenance and dynamics is therefore essential for human health and fertility, but also for industrial production, food production and plant breeding. The Vienna Biocenter Campus hosts a cluster of research groups with a strong research record in chromosome biology. Yet, a graduate research program dedicated to the topic is missing. Here we propose a structured doctorate program in the field of chromosome biology to remedy this shortcoming. The principal investigators contributing to the anticipated doctorate program "Chromosome Dynamics" will ensure familiarization of students with various model organisms, approaches, techniques and perspectives a goal much too ambitious to achieve on the basis of individual grants. Research topics include DNA repair, chromosome movement and segregation, telomere function, mitotic and meiotic divisions and cell cycle. The doctoral program will coordinate the teaching activities of the participating faculty and considerably extend the teaching dedicated towards chromosome biology. It will establish platforms for teaching, seminars and retreats that will ensure intellectual exchange, sharing of experiences and techniques. As a unique feature, the doctorate program will organize special work-shops, with an emphasis on subjects important for scientific work not necessarily specific to the individual research topics. The training goal is to raise young, enthusiastic, but also critical researchers, with a profound education in chromosome biology. A dedicated blend of seminars, lectures and workshops together with their actual research work will strengthen their flexibility to succeed both, within and outside their special field and in- as well as outside of academia.
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consortium member (01.03.2012 - 31.08.2021)
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consortium member (01.03.2012 - 31.08.2021)
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consortium member (01.03.2012 - 31.08.2021)
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consortium member (01.03.2012 - 31.08.2021)
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consortium member (01.03.2012 - 31.08.2021)
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consortium member (01.03.2012 - 31.08.2021)
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consortium member (01.03.2012 - 31.08.2021)
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consortium member (01.03.2012 - 31.08.2021)
- Gregor Mendel Institute of Molecular Plant Biology
- Universität Wien
- IMBA – Institut für Molekulare Biotechnologie GmbH
- Daniel Wolfram Gerlich, IMBA – Institut für Molekulare Biotechnologie GmbH , associated research partner
- Ortrun Mittelsten Scheid, Gregor Mendel Institute of Molecular Plant Biology , associated research partner
- Amy Shaub-Maddox, Université de Montréal - Canada
- Mathilde Grelon, INRA - Centre de recherche de Versailles-Grignon - France
- Julien Dumont, Institut Jaques Monod - France
- Aline V. Probst, Université Clermont Auvergne - France
- Arp Schnittger, Universität Hamburg - Germany
- Andrea Pichler, Max Planck Institute - Germany
- Thomas Müller-Reichert, Technische Universität Dresden - Germany
- Avraham A. Levy, Weizmann Institute of Science - Israel
- Francesc Posas, Universitat Pompeu Fabra - Spain
- Camilla Sjoegren, Karolinska Institutet - Sweden
- Matthias Peter, ETH Hönggerberg - Switzerland
- Michael Lichten, National Cancer Institute - USA
- Dorothy E. Shippen, Texas A&M University - USA
- Kim Nasmyth, The University of Oxford
- Christopher Franklin, The University of Birmingham
- Stephen Kearsey, University of Oxford
Research Output
- 4759 Citations
- 72 Publications
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2020
Title Conformation of sister chromatids in the replicated human genome DOI 10.1038/s41586-020-2744-4 Type Journal Article Author Mitter M Journal Nature Pages 139-144 Link Publication -
2021
Title Polyploidy-associated paramutation in Arabidopsis is determined by small RNAs, temperature, and allele structure DOI 10.1371/journal.pgen.1009444 Type Journal Article Author Bente H Journal PLOS Genetics Link Publication -
2021
Title A CENH3 mutation promotes meiotic exit and restores fertility in SMG7-deficient Arabidopsis DOI 10.1101/2021.04.08.439068 Type Preprint Author Capitao C Pages 2021.04.08.439068 Link Publication -
2019
Title Differential Requirements for Centrioles in Mitotic Centrosome Growth and Maintenance DOI 10.1016/j.devcel.2019.06.004 Type Journal Article Author Cabral G Journal Developmental Cell Link Publication -
2019
Title Identification of proteins associated with splicing factors Ntr1, Ntr2, Brr2 and Gpl1 in the fission yeast Schizosaccharomyces pombe DOI 10.1080/15384101.2019.1632126 Type Journal Article Author Cipakova I Journal Cell Cycle Pages 1532-1536 Link Publication -
2019
Title Meiotic DNA Repair in the Nucleolus Employs a Non-homologous End Joining Mechanism DOI 10.1105/tpc.19.00367 Type Journal Article Author Sims J Journal The Plant Cell Link Publication -
2019
Title H2A Variants in Arabidopsis: Versatile Regulators of Genome Activity DOI 10.1016/j.xplc.2019.100015 Type Journal Article Author Lei B Journal Plant Communications Pages 100015 Link Publication -
2021
Title Crosstalk between H2A variant-specific modifications impacts vital cell functions DOI 10.1371/journal.pgen.1009601 Type Journal Article Author Schmücker A Journal PLOS Genetics Link Publication -
2021
Title DNA topoisomerase 3 is required for efficient germ cell quality control DOI 10.1083/jcb.202012057 Type Journal Article Author Dello Stritto M Journal Journal of Cell Biology Link Publication -
2021
Title The evolution of imprinting in plants: beyond the seed DOI 10.1007/s00497-021-00410-7 Type Journal Article Author Montgomery S Journal Plant Reproduction Pages 373-383 Link Publication -
2021
Title A chromatin phase transition protects mitotic chromosomes against microtubule perforation DOI 10.1101/2021.07.05.450834 Type Preprint Author Schneider M Pages 2021.07.05.450834 Link Publication -
2021
Title In Diverse Conditions Intrinsic Chromatin Condensates Have Liquid-like Material Properties DOI 10.1101/2021.11.22.469620 Type Preprint Author Gibson B Pages 2021.11.22.469620 Link Publication -
2021
Title A CENH3 mutation promotes meiotic exit and restores fertility in SMG7-deficient Arabidopsis DOI 10.1371/journal.pgen.1009779 Type Journal Article Author Capitao C Journal PLOS Genetics Link Publication -
2022
Title Sister chromatid–sensitive Hi-C to map the conformation of replicated genomes DOI 10.1038/s41596-022-00687-6 Type Journal Article Author Mitter M Journal Nature Protocols Pages 1486-1517 -
2022
Title A hormone-activated mobile RNAi pathway defends plant stem cells from virus infection DOI 10.1101/2022.12.18.520928 Type Preprint Author Incarbone M Pages 2022.12.18.520928 Link Publication -
2018
Title BRCA1-BARD1 associate with the synaptonemal complex and pro-crossover factors and influence RAD-51 dynamics during Caenorhabditis elegans meiosis DOI 10.1371/journal.pgen.1007653 Type Journal Article Author Janisiw E Journal PLOS Genetics Link Publication -
2018
Title Functional Characterization of SMG7 Paralogs in Arabidopsis thaliana DOI 10.3389/fpls.2018.01602 Type Journal Article Author Capitao C Journal Frontiers in Plant Science Pages 1602 Link Publication -
2018
Title Single-nucleus Hi-C of mammalian oocytes and zygotes DOI 10.1016/bs.mcb.2018.03.032 Type Book Chapter Author Gassler J Publisher Elsevier Pages 389-407 -
2018
Title The BRCA1-BARD1 complex associates with the synaptonemal complex and pro-crossover factors and influences RAD-51 dynamics during Caenorhabditis elegans meiosis DOI 10.1101/280214 Type Preprint Author Janisiw E Pages 280214 Link Publication -
2018
Title Genomic insights into chromatin reprogramming to totipotency in embryos DOI 10.1083/jcb.201807044 Type Journal Article Author Ladstätter S Journal Journal of Cell Biology Pages 70-82 Link Publication -
2018
Title Initiation of Meiotic Development Is Controlled by Three Post-transcriptional Pathways in Caenorhabditis elegans DOI 10.1534/genetics.118.300985 Type Journal Article Author Mohammad A Journal Genetics Pages 1197-1224 Link Publication -
2013
Title The Arabidopsis SWR1 Chromatin-Remodeling Complex Is Important for DNA Repair, Somatic Recombination, and Meiosis DOI 10.1105/tpc.112.104067 Type Journal Article Author Rosa M Journal The Plant Cell Pages 1990-2001 Link Publication -
2013
Title Chromosome Segregation: Disarming the Protector DOI 10.1016/j.cub.2013.02.028 Type Journal Article Author Sanyal S Journal Current Biology Link Publication -
2012
Title Microtubule Organization: A Pericentriolar Material-Like Structure in Yeast Meiosis DOI 10.1016/j.cub.2012.02.036 Type Journal Article Author Dammermann A Journal Current Biology Link Publication -
2016
Title A Surveillance Mechanism Ensures Repair of DNA Lesions during Zygotic Reprogramming DOI 10.1016/j.cell.2016.11.009 Type Journal Article Author Ladstätter S Journal Cell Link Publication -
2016
Title A Surveillance System Ensures Crossover Formation in C. elegans DOI 10.1016/j.cub.2016.09.007 Type Journal Article Author Machovina T Journal Current Biology Pages 2873-2884 Link Publication -
2018
Title Transient and Partial Nuclear Lamina Disruption Promotes Chromosome Movement in Early Meiotic Prophase DOI 10.1016/j.devcel.2018.03.018 Type Journal Article Author Link J Journal Developmental Cell Link Publication -
2018
Title Transposons: a blessing curse DOI 10.1016/j.pbi.2018.01.003 Type Journal Article Author Dubin M Journal Current Opinion in Plant Biology Pages 23-29 Link Publication -
2018
Title Mutations that prevent methylation of cohesin render sensitivity to DNA damage in S. pombe DOI 10.1242/jcs.214924 Type Journal Article Author Sanyal S Journal Journal of Cell Science Link Publication -
2016
Title Cdk3, a conjugation-specific cyclin-dependent kinase, is essential for the initiation of meiosis in Tetrahymena thermophila DOI 10.1080/15384101.2016.1207838 Type Journal Article Author Yan G Journal Cell Cycle Pages 2506-2514 Link Publication -
2021
Title Caenorhabditis elegans RMI2 functional homolog-2 (RMIF-2) and RMI1 (RMH-1) have both overlapping and distinct meiotic functions within the BTR complex DOI 10.1371/journal.pgen.1009663 Type Journal Article Author Velkova M Journal PLOS Genetics Link Publication -
2019
Title Mitotic Chromosome Mechanics: How Cells Segregate Their Genome DOI 10.1016/j.tcb.2019.05.007 Type Journal Article Author Batty P Journal Trends in Cell Biology Pages 717-726 Link Publication -
2019
Title Probing the 3D architecture of the plant nucleus with microscopy approaches: challenges and solutions DOI 10.1080/19491034.2019.1644592 Type Journal Article Author Dumur T Journal Nucleus Pages 181-212 Link Publication -
2019
Title Organization of Chromatin by Intrinsic and Regulated Phase Separation DOI 10.1016/j.cell.2019.08.037 Type Journal Article Author Gibson B Journal Cell Link Publication -
2020
Title Versatile in vitro assay to recognize Cas9-induced mutations DOI 10.1002/pld3.269 Type Journal Article Author Bente H Journal Plant Direct Link Publication -
2020
Title Chromosome clustering by Ki-67 excludes cytoplasm during nuclear assembly DOI 10.1038/s41586-020-2672-3 Type Journal Article Author Cuylen-Haering S Journal Nature Pages 285-290 Link Publication -
2020
Title Sister-chromatid-sensitive Hi-C reveals the conformation of replicated human chromosomes DOI 10.1101/2020.03.10.978148 Type Preprint Author Mitter M Pages 2020.03.10.978148 Link Publication -
2022
Title Transposons repressed by H3K27me3 were co-opted as cis-regulatory elements of H3K27me3 controlled protein coding genes during evolution of plants DOI 10.1101/2022.10.24.513474 Type Preprint Author Hisanaga T Pages 2022.10.24.513474 Link Publication -
2022
Title A mitotic chromatin phase transition prevents perforation by microtubules DOI 10.1038/s41586-022-05027-y Type Journal Article Author Schneider M Journal Nature Pages 183-190 Link Publication -
2022
Title Polycomb-mediated repression of paternal chromosomes maintains haploid dosage in diploid embryos of Marchantia DOI 10.7554/elife.79258 Type Journal Article Author Montgomery S Journal eLife Link Publication -
2022
Title Diversification of chromatin organization in eukaryotes DOI 10.1016/j.ceb.2021.12.002 Type Journal Article Author Jamge B Journal Current Opinion in Cell Biology Pages 1-6 -
2022
Title Polycomb-mediated repression of paternal chromosomes maintains haploid dosage in diploid embryos of Marchantia DOI 10.1101/2022.02.04.477531 Type Preprint Author Montgomery S Pages 2022.02.04.477531 Link Publication -
2017
Title Promoter interactions direct chromatin folding in embryonic stem cells DOI 10.1038/nsmb.3421 Type Journal Article Author Sanyal S Journal Nature Structural & Molecular Biology Pages 494-495 -
2017
Title A novel non-canonical PIP-box mediates PARG interaction with PCNA DOI 10.1093/nar/gkx604 Type Journal Article Author Kaufmann T Journal Nucleic Acids Research Pages 9741-9759 Link Publication -
2017
Title PARP inhibition causes premature loss of cohesion in cancer cells DOI 10.18632/oncotarget.21879 Type Journal Article Author Kukolj E Journal Oncotarget Pages 103931-103951 Link Publication -
2021
Title The genetic and epigenetic landscape of the Arabidopsis centromeres DOI 10.1126/science.abi7489 Type Journal Article Author Naish M Journal Science Link Publication -
2021
Title It Is Just a Matter of Time: Balancing Homologous Recombination and Non-homologous End Joining at the rDNA Locus During Meiosis DOI 10.3389/fpls.2021.773052 Type Journal Article Author Sims J Journal Frontiers in Plant Science Pages 773052 Link Publication -
2021
Title Crosstalk between H2A variant-specific modifications impacts vital cell functions DOI 10.1101/2021.01.14.426637 Type Preprint Author Schmücker A Pages 2021.01.14.426637 Link Publication -
2021
Title From Microscopy to Nanoscopy: Defining an Arabidopsis thaliana Meiotic Atlas at the Nanometer Scale DOI 10.3389/fpls.2021.672914 Type Journal Article Author Sims J Journal Frontiers in Plant Science Pages 672914 Link Publication -
2021
Title Under siege: virus control in plant meristems and progeny DOI 10.1093/plcell/koab140 Type Journal Article Author Bradamante G Journal The Plant Cell Pages 2523-2537 Link Publication -
2017
Title E2fl1 is a meiosis-specific transcription factor in the protist Tetrahymena thermophila DOI 10.1080/15384101.2016.1259779 Type Journal Article Author Zhang J Journal Cell Cycle Pages 123-135 Link Publication -
2017
Title Epigenetic contribution to diversification DOI 10.1073/pnas.1702748114 Type Journal Article Author Bente H Journal Proceedings of the National Academy of Sciences Pages 3558-3560 Link Publication -
2017
Title Single-nucleus Hi-C reveals unique chromatin reorganization at oocyte-to-zygote transition DOI 10.1038/nature21711 Type Journal Article Author Flyamer I Journal Nature Pages 110-114 Link Publication -
2016
Title Dbl2 Regulates Rad51 and DNA Joint Molecule Metabolism to Ensure Proper Meiotic Chromosome Segregation DOI 10.1371/journal.pgen.1006102 Type Journal Article Author Polakova S Journal PLOS Genetics Link Publication -
2016
Title SIRT2 regulates nuclear envelope reassembly through ANKLE2 deacetylation DOI 10.1242/jcs.192633 Type Journal Article Author Kaufmann T Journal Journal of Cell Science Pages 4607-4621 Link Publication -
2016
Title Chromosome Cohesion Established by Rec8-Cohesin in Fetal Oocytes Is Maintained without Detectable Turnover in Oocytes Arrested for Months in Mice DOI 10.1016/j.cub.2015.12.073 Type Journal Article Author Burkhardt S Journal Current Biology Pages 678-685 Link Publication -
2016
Title Separable Roles for a Caenorhabditis elegans RMI1 Homolog in Promoting and Antagonizing Meiotic Crossovers Ensure Faithful Chromosome Inheritance DOI 10.1371/journal.pbio.1002412 Type Journal Article Author Jagut M Journal PLOS Biology Link Publication -
2016
Title Nuclear Envelope Retention of LINC Complexes Is Promoted by SUN-1 Oligomerization in the Caenorhabditis elegans Germ Line DOI 10.1534/genetics.116.188094 Type Journal Article Author Daryabeigi A Journal Genetics Pages 733-748 Link Publication -
2016
Title Cyc17, a meiosis-specific cyclin, is essential for anaphase initiation and chromosome segregation in Tetrahymena thermophila DOI 10.1080/15384101.2016.1188238 Type Journal Article Author Yan G Journal Cell Cycle Pages 1855-1864 Link Publication -
2015
Title Chapter 18 Ultrastructural analysis of Caenorhabditis elegans cilia DOI 10.1016/bs.mcb.2015.03.014 Type Book Chapter Author Serwas D Publisher Elsevier Pages 341-367 -
2015
Title Isotropic incorporation of SPD-5 underlies centrosome assembly in C. elegans DOI 10.1016/j.cub.2015.05.060 Type Journal Article Author Laos T Journal Current Biology Link Publication -
2015
Title Exo1 and Mre11 execute meiotic DSB end resection in the protist Tetrahymena DOI 10.1016/j.dnarep.2015.08.005 Type Journal Article Author Lukaszewicz A Journal DNA Repair Pages 137-143 Link Publication -
2015
Title Stress-induced structural changes in plant chromatin DOI 10.1016/j.pbi.2015.05.011 Type Journal Article Author Probst A Journal Current Opinion in Plant Biology Pages 8-16 Link Publication -
2015
Title Transcription dynamically patterns the meiotic chromosome-axis interface DOI 10.7554/elife.07424 Type Journal Article Author Sun X Journal eLife Link Publication -
2012
Title SAS-6 coiled-coil structure and interaction with SAS-5 suggest a regulatory mechanism in C. elegans centriole assembly DOI 10.1038/emboj.2012.280 Type Journal Article Author Qiao R Journal The EMBO Journal Pages 4334-4347 Link Publication -
2014
Title Chiasmatic and achiasmatic inverted meiosis of plants with holocentric chromosomes DOI 10.1038/ncomms6070 Type Journal Article Author Cabral G Journal Nature Communications Pages 5070 Link Publication -
2013
Title If the cap fits, wear it: an overview of telomeric structures over evolution DOI 10.1007/s00018-013-1469-z Type Journal Article Author Fulcher N Journal Cellular and Molecular Life Sciences Pages 847-865 Link Publication -
2013
Title Crosstalk between casein kinase II and Ste20-related kinase Nak1 DOI 10.4161/cc.24095 Type Journal Article Author Cipak L Journal Cell Cycle Pages 884-888 Link Publication -
2013
Title Matefin/SUN-1 Phosphorylation Is Part of a Surveillance Mechanism to Coordinate Chromosome Synapsis and Recombination with Meiotic Progression and Chromosome Movement DOI 10.1371/journal.pgen.1003335 Type Journal Article Author Woglar A Journal PLoS Genetics Link Publication -
2014
Title How a Retrotransposon Exploits the Plant's Heat Stress Response for Its Activation DOI 10.1371/journal.pgen.1004115 Type Journal Article Author Cavrak V Journal PLoS Genetics Link Publication -
2013
Title Multiple Mechanisms Contribute to Centriole Separation in C. elegans DOI 10.1016/j.cub.2013.06.043 Type Journal Article Author Cabral G Journal Current Biology Pages 1380-1387 Link Publication -
2013
Title Smc5/6-Mms21 Prevents and Eliminates Inappropriate Recombination Intermediates in Meiosis DOI 10.1371/journal.pgen.1004067 Type Journal Article Author Xaver M Journal PLoS Genetics Link Publication