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Tomography across the Scales

Tomography across the Scales

Otmar Scherzer (ORCID: 0000-0001-9378-7452)
  • Grant DOI 10.55776/F68
  • Funding program Special Research Areas
  • Status ongoing
  • Start March 1, 2018
  • End December 31, 2026
  • Funding amount € 7,296,066
  • Project website

Disciplines

Mathematics (100%)

Keywords

    Tomography, Algorithms, Imaging, Modelling

Abstract

Technologies which provide insight into the structure of biological/human material repeatedly have led to medical breakthroughs. In 1979, Allan MacLeod Cormack and Godfrey Houndsfield won the Nobel Prize in Physiology and Medicine for the first development of a CT-Scanner. The ability to inspect the internal three-dimensional structure of the human body by tomography has revolutionized medicine. And also on the microscopic scale recently a revolution took place: In 2014, Eric Betzig, Stefan Hell, and William E. Moerner won the Nobel prize in Chemistry for the development of super-resolution microscopy which enables a detail-resolution that was long believed to be impossible in optical microscopy. Mathematicians, meanwhile, have created the basis for the computational analysis of imaging data. 100 years ago, the Austrian mathematician Johann Radon devised the back-projection formulas for the Radon transform - as it is nowadays called. In the twentieth century, the Russian mathematician Andrey Nikolayevich Tikhonov contributed the mathematical foundations of regularization theory. Most current imaging technologies are bas ed on these seminal scientific achievements. Today imaging techniques are making progress at a breathtaking speed. Tomography pervades scientific disciplines beyond medicine, ranging from biology via medicine to astrophysics. Microscopy resolves biological structures down to the nanoscale, where single molecules become visible.Most importantly, the time to record such images has been reduced dramatically so that dynamic processes can be imaged in real-time.These developments call for advancing mathematical concepts that enable to extract from such data sets the essential information using modern computing technology. This SFB connects four experimental imaging groups and four mathematical groups in order to meet these challenges. The experimental groups contribute imaging techniques and scientific expertise in applied optics, biophysics, biology, medicine, and astronomy. The mathematical groups are proficient in modeling, regularization, statistical pattern recognition, and numerical optimization. The mission of this consortium is to enable image analysis of dynamic processes in nature across the scales. G_Abstract (03/2015)

Consortium
  • Gerhard J. Schütz, Technische Universität Wien
    consortium member (01.03.2018 -)
  • Glenn (Petrus Martinus) Van De Ven, Universität Wien
    consortium member (01.03.2022 -)
  • Monika Ritsch-Marte, Medizinische Universität Innsbruck
    consortium member (01.03.2018 -)
  • Otmar Scherzer, Universität Wien
    consortium member (01.03.2018 -)
  • Peter Elbau, Universität Wien
    consortium member (01.03.2018 -)
  • Ronny Ramlau, Universität Linz
    consortium member (01.03.2018 -)
  • Wolfgang Drexler, Medizinische Universität Wien
    consortium member (01.03.2018 -)
Research institution(s)
  • Universität Wien
Project participants
  • Ronny Ramlau, Österreichische Akademie der Wissenschaften , associated research partner

Research Output

  • 781 Citations
  • 134 Publications
  • 4 Artistic Creations
  • 6 Disseminations
  • 7 Scientific Awards
Publications
  • 2025
    Title A study of particle motion in the presence of clusters
    DOI 10.1080/03610918.2025.2450706
    Type Journal Article
    Author Steidl G
    Journal Communications in Statistics - Simulation and Computation
  • 2025
    Title On SCD Semismooth * Newton methods for the efficient minimization of Tikhonov functionals with non-smooth and non-convex penalties
    DOI 10.1088/1361-6420/ade181
    Type Journal Article
    Author Gfrerer H
    Journal Inverse Problems
  • 2025
    Title Norms in sinogram space and stability estimates for the Radon transform
    DOI 10.1088/1361-6420/adab13
    Type Journal Article
    Author Hubmer S
    Journal Inverse Problems
  • 2025
    Title On Phase Unwrapping via Digital Wavefront Sensors
    DOI 10.1137/24m1680994
    Type Journal Article
    Author Hubmer S
    Journal SIAM Journal on Imaging Sciences
  • 2025
    Title Generalized Fourier Diffraction Theorem and Filtered Backpropagation for Tomographic Reconstruction
    DOI 10.1137/24m167370x
    Type Journal Article
    Author Kirisits C
    Journal SIAM Journal on Imaging Sciences
  • 2025
    Title An Inverse Problems Approach to Pulse Wave Analysis in the Human Brain
    DOI 10.1137/24m163921x
    Type Journal Article
    Author Hubmer S
    Journal SIAM Journal on Imaging Sciences
  • 2023
    Title On the range of the $ X $-ray transform of symmetric tensors compactly supported in the plane
    DOI 10.3934/ipi.2022070
    Type Journal Article
    Author Sadiq K
    Journal Inverse Problems and Imaging
  • 2023
    Title Development of mathematical models for quantitative OCT: A review
    DOI 10.3934/math.2023130
    Type Journal Article
    Author Elbau P
    Journal AIMS Mathematics
  • 2023
    Title Quantitative inverse problem in visco-acoustic media under attenuation model uncertainty
    DOI 10.1016/j.jcp.2022.111685
    Type Journal Article
    Author Faucher F
    Journal Journal of Computational Physics
  • 2023
    Title Motion detection in diffraction tomography by common circle methods
    DOI 10.1090/mcom/3869
    Type Journal Article
    Author Elbau P
    Journal Mathematics of Computation
  • 2023
    Title A theoretical and numerical study of oblique scattering by an inhomogeneous cylinder
    DOI 10.1088/1742-6596/2444/1/012009
    Type Journal Article
    Author Gintides D
    Journal Journal of Physics: Conference Series
  • 2022
    Title Approximation Properties of the Double Fourier Sphere Method
    DOI 10.1007/s00041-022-09928-4
    Type Journal Article
    Author Mildenberger S
    Journal Journal of Fourier Analysis and Applications
  • 2022
    Title A mathematical approach towards THz tomography for non-destructive imaging
    DOI 10.3934/ipi.2021041
    Type Journal Article
    Author Hubmer S
    Journal Inverse Problems & Imaging
  • 2022
    Title On regularization via frame decompositions with applications in tomography
    DOI 10.1088/1361-6420/ac5b86
    Type Journal Article
    Author Hubmer S
    Journal Inverse Problems
    Pages 055003
    Link Publication
  • 2022
    Title Performance of an iterative wavelet reconstructor for the Multi-conjugate Adaptive Optics RelaY of the Extremely Large Telescope
    DOI 10.1117/1.jatis.8.2.021503
    Type Journal Article
    Author Stadler B
    Journal Journal of Astronomical Telescopes, Instruments, and Systems
    Pages 021503-021503
  • 2022
    Title Don’t Be Fooled by Randomness: Valid p-Values for Single Molecule Microscopy
    DOI 10.3389/fbinf.2022.811053
    Type Journal Article
    Author Schneider M
    Journal Frontiers in Bioinformatics
    Pages 811053
    Link Publication
  • 2024
    Title Diffraction tomography for incident Herglotz waves
    DOI 10.1088/1361-6420/ad7d2d
    Type Journal Article
    Author Kirisits C
    Journal Inverse Problems
  • 2024
    Title Quadratic Neural Networks for Solving Inverse Problems
    DOI 10.1080/01630563.2024.2316580
    Type Journal Article
    Author Frischauf L
    Journal Numerical Functional Analysis and Optimization
  • 2024
    Title Interactive simulation and visualization of point spread functions in single molecule imaging
    DOI 10.1016/j.optcom.2024.130463
    Type Journal Article
    Author Hinterer F
    Journal Optics Communications
  • 2024
    Title Time-harmonic optical flow with applications in elastography
    DOI 10.1088/1361-6420/ad9776
    Type Journal Article
    Author Melnyk O
    Journal Inverse Problems
  • 2024
    Title Enhancing Predictive Quality in HVOF Coating Technology: A Comparative Analysis of Machine Learning Techniques
    DOI 10.1016/j.procs.2024.01.136
    Type Journal Article
    Author Hambrock C
    Journal Procedia Computer Science
  • 2024
    Title Regularization of Linear Inverse Problems with Irregular Noise Using Embedding Operators
    DOI 10.1137/24m1636307
    Type Journal Article
    Author Hubmer S
    Journal SIAM Journal on Imaging Sciences
  • 2024
    Title Computational inverse scattering with internal sources: A reproducing kernel Hilbert space approach.
    DOI 10.1103/physreve.110.065302
    Type Journal Article
    Author Dong Y
    Journal Physical review. E
    Pages 065302
  • 2024
    Title Predictive modelling of critical variables for improving HVOF coating using gamma regression models
    DOI 10.1186/s13362-024-00146-9
    Type Journal Article
    Author Hubmer S
    Journal Journal of Mathematics in Industry
  • 2024
    Title An Inversion Scheme for Elastic Diffraction Tomography Based on Mode Separation
    DOI 10.1137/22m1538909
    Type Journal Article
    Author Mejri B
    Journal SIAM Journal on Applied Mathematics
  • 2024
    Title Parallelly Sliced Optimal Transport on Spheres and on the Rotation Group
    DOI 10.1007/s10851-024-01206-w
    Type Journal Article
    Author Buecher L
    Journal Journal of Mathematical Imaging and Vision
  • 2024
    Title Uncertainty Quantification for Scale-Space Blob Detection.
    DOI 10.1007/s10851-024-01194-x
    Type Journal Article
    Author Kirisits C
    Journal Journal of mathematical imaging and vision
    Pages 697-717
  • 2024
    Title Improvements on speed, stability and field of view in adaptive optics OCT for anterior retinal imaging using a pyramid wavefront sensor.
    DOI 10.1364/boe.533451
    Type Journal Article
    Author Brunner E
    Journal Biomedical optics express
    Pages 6098-6116
  • 2024
    Title Analysis of generalized iteratively regularized Landweber iterations driven by data; In: Data-driven Models in Inverse Problems
    DOI 10.1515/9783111251233-008
    Type Book Chapter
    Publisher De Gruyter
  • 2024
    Title Ultrasound-induced reorientation for multi-angle optical coherence tomography.
    DOI 10.1038/s41467-024-46506-2
    Type Journal Article
    Author Deng S
    Journal Nature communications
    Pages 2391
  • 2024
    Title Classification with neural networks with quadratic decision functions; In: Data-driven Models in Inverse Problems
    DOI 10.1515/9783111251233-014
    Type Book Chapter
    Publisher De Gruyter
  • 2023
    Title Uncertainty-aware blob detection with an application to integrated-light stellar population recoveries
    DOI 10.1051/0004-6361/202244739
    Type Journal Article
    Author Jethwa P
    Journal Astronomy & Astrophysics
  • 2023
    Title A Frame Decomposition oftheFunk-Radon Transform; In: Scale Space and Variational Methods in Computer Vision - 9th International Conference, SSVM 2023, Santa Margherita di Pula, Italy, May 21-25, 2023, Proceedings
    DOI 10.1007/978-3-031-31975-4_4
    Type Book Chapter
    Publisher Springer International Publishing
  • 2023
    Title Quantitative parameter reconstruction from optical coherence tomographic data
    DOI 10.1088/1361-6420/ad0fab
    Type Journal Article
    Author Elbau P
    Journal Inverse Problems
  • 2023
    Title Sliced optimal transport on the sphere
    DOI 10.1088/1361-6420/acf156
    Type Journal Article
    Author Beinert R
    Journal Inverse Problems
  • 2023
    Title A Projected Nesterov-Kaczmarz Approach to Stellar Population-Kinematic Distribution Reconstruction in Extragalactic Archaeology
    DOI 10.1137/22m1503002
    Type Journal Article
    Author Hinterer F
    Journal SIAM Journal on Imaging Sciences
  • 2023
    Title On the X -ray transform of planar symmetric tensors
    DOI 10.1515/jiip-2022-0055
    Type Journal Article
    Author Omogbhe D
    Journal Journal of Inverse and Ill-posed Problems
  • 2023
    Title Subaperture-Based Digital Aberration Correction for Optical Coherence Tomography: A Novel Mathematical Approach
    DOI 10.1137/22m1543240
    Type Journal Article
    Author Hubmer S
    Journal SIAM Journal on Imaging Sciences
  • 2023
    Title An inverse source problem for linearly anisotropic radiative sources in absorbing and scattering medium
    DOI 10.1080/00036811.2023.2234387
    Type Journal Article
    Author Omogbhe D
    Journal Applicable Analysis
  • 2023
    Title Characterizations of adjoint Sobolev embedding operators with applications in inverse problems
    DOI 10.1553/etna_vol59s116
    Type Journal Article
    Author Hubmer S
    Journal ETNA - Electronic Transactions on Numerical Analysis
  • 2023
    Title Localization of fixed dipoles at high precision by accounting for sample drift during illumination
    DOI 10.1063/5.0137834
    Type Journal Article
    Author Hinterer F
    Journal Applied Physics Letters
  • 2022
    Title Diffraction Tomography, Fourier Reconstruction, and Full Waveform Inversion
    DOI 10.1007/978-3-030-03009-4_115-1
    Type Book Chapter
    Author Faucher F
    Publisher Springer Nature
    Pages 1-40
  • 2022
    Title Quantitative Optical Coherence Elastography: A Novel Intensity-Based Inversion Method Versus Strain-Based Reconstructions
    DOI 10.1109/jstqe.2022.3225108
    Type Journal Article
    Author Krainz L
    Journal IEEE Journal of Selected Topics in Quantum Electronics
    Pages 1-16
    Link Publication
  • 2022
    Title A numerical comparison of some heuristic stopping rules for nonlinear Landweber iteration
    DOI 10.1553/etna_vol57s216
    Type Journal Article
    Author Hubmer S
    Journal ETNA - Electronic Transactions on Numerical Analysis
    Pages 216-241
    Link Publication
  • 2022
    Title A new inversion scheme for elastic diffraction tomography
    DOI 10.48550/arxiv.2212.02798
    Type Preprint
    Author Mejri B
  • 2022
    Title Acoustofluidic trapping device for high-NA multi-angle imaging
    DOI 10.3389/fphy.2022.940115
    Type Journal Article
    Author Løvmo M
    Journal Frontiers in Physics
    Pages 940115
    Link Publication
  • 2022
    Title On convergence rates of adaptive ensemble Kalman inversion for linear ill-posed problems
    DOI 10.1007/s00211-022-01314-y
    Type Journal Article
    Author Parzer F
    Journal Numerische Mathematik
    Pages 371-409
    Link Publication
  • 2022
    Title Motion Detection in Diffraction Tomography by Common Circle Methods
    DOI 10.48550/arxiv.2209.08086
    Type Preprint
    Author Quellmalz M
  • 2022
    Title Total Variation-Based Reconstruction and Phase Retrieval for Diffraction Tomography
    DOI 10.1137/22m1474382
    Type Journal Article
    Author Beinert R
    Journal SIAM Journal on Imaging Sciences
  • 2022
    Title Accelerating the Sinkhorn Algorithm for Sparse Multi-Marginal Optimal Transport via Fast Fourier Transforms
    DOI 10.3390/a15090311
    Type Journal Article
    Author Ba F
    Journal Algorithms
  • 2023
    Title Gauss-Newton method for solving linear inverse problems with neural network coders
    DOI 10.1007/s43670-023-00066-6
    Type Journal Article
    Author Hofmann B
    Journal Sampling Theory, Signal Processing, and Data Analysis
  • 2023
    Title Total Variation-Based Reconstruction and Phase Retrieval for Diffraction Tomography with an Arbitrarily Moving Object
    DOI 10.1002/pamm.202200135
    Type Journal Article
    Author Beinert R
    Journal PAMM
  • 2023
    Title Newton's methods for solving linear inverse problems with neural network coders
    DOI 10.48550/arxiv.2303.14058
    Type Preprint
    Author Hofmann B
    Link Publication
  • 2023
    Title A double Fourier sphere method for d-dimensional manifolds
    DOI 10.1007/s43670-023-00064-8
    Type Journal Article
    Author Mildenberger S
    Journal Sampling Theory, Signal Processing, and Data Analysis
  • 2023
    Title Synthetic dataset for visco-acoustic imaging.
    DOI 10.1016/j.dib.2023.109199
    Type Journal Article
    Author Faucher F
    Journal Data in brief
    Pages 109199
  • 2022
    Title Robust and bias-free localization of individual fixed dipole emitters achieving the Cramér Rao bound for applications in cryo-single molecule localization microscopy
    DOI 10.1371/journal.pone.0263500
    Type Journal Article
    Author Hinterer F
    Journal PLoS ONE
    Link Publication
  • 2022
    Title On the Numerical Solution of a Hyperbolic Inverse Boundary Value Problem in Bounded Domains
    DOI 10.3390/math10050750
    Type Journal Article
    Author Chapko R
    Journal Mathematics
    Pages 750
    Link Publication
  • 2022
    Title Diffusion tensor regularization with metric double integrals
    DOI 10.1515/jiip-2021-0041
    Type Journal Article
    Author Frischauf L
    Journal Journal of Inverse and Ill-posed Problems
    Pages 163-190
    Link Publication
  • 2022
    Title Computed Origami Tomography
    DOI 10.1137/20m1378247
    Type Journal Article
    Author Kittenberger A
    Journal SIAM Review
    Pages 469-484
    Link Publication
  • 2022
    Title Direction dependent point spread function reconstruction for multi-conjugate adaptive optics on giant segmented mirror telescopes
    DOI 10.1016/j.ascom.2022.100590
    Type Journal Article
    Author Wagner R
    Journal Astronomy and Computing
    Pages 100590
    Link Publication
  • 2025
    Title Image Quality in Adaptive Optics Optical Coherence Tomography of Diabetic Patients.
    DOI 10.3390/diagnostics15040429
    Type Journal Article
    Author Brunner E
    Journal Diagnostics (Basel, Switzerland)
  • 2025
    Title Slicing of radial functions: a dimension walk in the Fourier space
    DOI 10.1007/s43670-025-00100-9
    Type Journal Article
    Author Quellmalz M
    Journal Sampling Theory, Signal Processing, and Data Analysis
  • 2025
    Title Leveraging real-time data analysis and multiple kernel learning for manufacturing of innovative steels
    DOI 10.1186/s13362-025-00175-y
    Type Journal Article
    Author Hubmer S
    Journal Journal of Mathematics in Industry
  • 2025
    Title Virtual Sensors and Thermal Modelling for Quality Control in Industrial Thermal Spraying
    DOI 10.1016/j.procs.2025.01.266
    Type Journal Article
    Author Hambrock C
    Journal Procedia Computer Science
  • 2025
    Title A Study of Why We Need to Reassess Full Reference Image Quality Assessment with Medical Images.
    DOI 10.1007/s10278-025-01462-1
    Type Journal Article
    Author Biguri A
    Journal Journal of imaging informatics in medicine
    Pages 3444-3469
  • 2025
    Title Neural Sampling from Boltzmann Densities: Fisher-Rao Curves in the Wasserstein Geometry
    Type Conference Proceeding Abstract
    Author Christian Wald
    Conference The Thirteenth International Conference on Learning Representations
    Link Publication
  • 2025
    Title Generative Sliced {MMD} Flows with Riesz Kernels
    Type Conference Proceeding Abstract
    Author Christian Wald
    Conference The Twelfth International Conference on Learning Representations
    Link Publication
  • 2025
    Title Fast Summation of Radial Kernels via {QMC} Slicing
    Type Conference Proceeding Abstract
    Author Johannes Hertrich
    Conference The Thirteenth International Conference on Learning Representations (ICLR)
  • 2024
    Title Sparse additive function decompositions facing basis transforms
    DOI 10.3934/fods.2024025
    Type Journal Article
    Author Antarou Ba F
    Journal Foundations of Data Science
  • 2020
    Title Asymptotic Expansions for Higher Order Elliptic Equations with an Application to Quantitative Photoacoustic Tomography
    DOI 10.1137/20m1317062
    Type Journal Article
    Author Aspri A
    Journal SIAM Journal on Imaging Sciences
    Pages 1781-1833
    Link Publication
  • 2020
    Title A note on the minimization of a Tikhonov functional with l1-penalty
    DOI 10.1088/1361-6420/ab89c2
    Type Journal Article
    Author Hinterer F
    Journal Inverse Problems
    Pages 074001
    Link Publication
  • 2020
    Title Diffusion Tensor Regularization with Metric Double Integrals
    DOI 10.48550/arxiv.2004.01585
    Type Preprint
    Author Frischauf L
  • 2021
    Title Frame decompositions of bounded linear operators in Hilbert spaces with applications in tomography
    DOI 10.1088/1361-6420/abe5b8
    Type Journal Article
    Author Hubmer S
    Journal Inverse Problems
    Pages 055001
    Link Publication
  • 2021
    Title Controlled orientation and sustained rotation of biological samples in a sono-optical microfluidic device
    DOI 10.1039/d0lc01261k
    Type Journal Article
    Author Kvåle Løvmo M
    Journal Lab on a Chip
    Pages 1563-1578
    Link Publication
  • 2021
    Title Quantitative OCT Reconstructions for Dispersive Media
    DOI 10.1007/978-3-030-57784-1_8
    Type Book Chapter
    Author Elbau P
    Publisher Springer Nature
    Pages 229-266
  • 2021
    Title The Tangential Cone Condition for Some Coefficient Identification Model Problems in Parabolic PDEs
    DOI 10.1007/978-3-030-57784-1_5
    Type Book Chapter
    Author Kaltenbacher B
    Publisher Springer Nature
    Pages 121-163
  • 2021
    Title Estimating Solution Smoothness and Data Noise with Tikhonov Regularization
    DOI 10.1080/01630563.2021.2007948
    Type Journal Article
    Author Gerth D
    Journal Numerical Functional Analysis and Optimization
    Pages 88-115
    Link Publication
  • 2021
    Title Subspace Recycling--Based Regularization Methods
    DOI 10.1137/20m1379617
    Type Journal Article
    Author Ramlau R
    Journal SIAM Journal on Matrix Analysis and Applications
    Pages 1480-1505
    Link Publication
  • 2018
    Title Regularization with Metric Double Integrals of Functions with Values in a Set of Vectors
    DOI 10.48550/arxiv.1805.07552
    Type Preprint
    Author Ciak R
  • 2021
    Title On convergence rates of adaptive ensemble Kalman inversion for linear ill-posed problems
    DOI 10.48550/arxiv.2104.10895
    Type Preprint
    Author Parzer F
  • 2021
    Title Phase-contrast THz-CT for non-destructive testing.
    DOI 10.1364/oe.422961
    Type Journal Article
    Author Fosodeder P
    Journal Optics express
    Pages 15711-15723
    Link Publication
  • 2021
    Title A workflow for sizing oligomeric biomolecules based on cryo single molecule localization microscopy
    DOI 10.1371/journal.pone.0245693
    Type Journal Article
    Author Schneider M
    Journal PLOS ONE
    Link Publication
  • 2021
    Title Reciprocity-gap misfit functional for distributed acoustic sensing, combining data from passive and active sources
    DOI 10.1190/geo2020-0305.1
    Type Journal Article
    Author Faucher F
    Journal GEOPHYSICS
    Link Publication
  • 2021
    Title Data driven reconstruction using frames and Riesz bases
    DOI 10.48550/arxiv.2103.05718
    Type Preprint
    Author Aspri A
  • 2019
    Title Regularization with Metric Double Integrals of Functions with Values in a Set of Vectors
    DOI 10.1007/s10851-018-00869-6
    Type Journal Article
    Author Ciak R
    Journal Journal of Mathematical Imaging and Vision
    Pages 824-848
    Link Publication
  • 2019
    Title How T Cells Do the “Search for the Needle in the Haystack”
    DOI 10.3389/fphy.2019.00011
    Type Journal Article
    Author Baumgart F
    Journal Frontiers in Physics
    Pages 11
    Link Publication
  • 2019
    Title Error estimates for Arnoldi–Tikhonov regularization for ill-posed operator equations
    DOI 10.1088/1361-6420/ab0663
    Type Journal Article
    Author Ramlau R
    Journal Inverse Problems
    Pages 055002
    Link Publication
  • 2019
    Title Real-time adaptive optics with pyramid wavefront sensors: part I. A theoretical analysis of the pyramid sensor model
    DOI 10.1088/1361-6420/ab0656
    Type Journal Article
    Author Hutterer V
    Journal Inverse Problems
    Pages 045007
    Link Publication
  • 2019
    Title Real-time adaptive optics with pyramid wavefront sensors: part II. Accurate wavefront reconstruction using iterative methods
    DOI 10.1088/1361-6420/ab0900
    Type Journal Article
    Author Hutterer V
    Journal Inverse Problems
    Pages 045008
    Link Publication
  • 2019
    Title Data driven regularization by projection
    DOI 10.48550/arxiv.1909.11570
    Type Preprint
    Author Aspri A
  • 2019
    Title A new temporal control approach for SCAO systems
    DOI 10.1088/1361-6420/ab44dc
    Type Journal Article
    Author Pttinger M
    Journal Inverse Problems
    Pages 015002
    Link Publication
  • 2019
    Title Homo- and Heteroassociations Drive Activation of ErbB3
    DOI 10.1016/j.bpj.2019.10.001
    Type Journal Article
    Author Váradi T
    Journal Biophysical Journal
    Pages 1935-1947
    Link Publication
  • 2019
    Title Regularization with Metric Double Integrals for Vector Tomography
    DOI 10.48550/arxiv.1911.06624
    Type Preprint
    Author Melching M
  • 2021
    Title Data Driven Reconstruction Using Frames and Riesz Bases
    DOI 10.1201/9781003050575-13
    Type Book Chapter
    Author Aspri A
    Publisher Taylor & Francis
    Pages 303-318
    Link Publication
  • 2021
    Title A Quantitative Model for Optical Coherence Tomography
    DOI 10.3390/s21206864
    Type Journal Article
    Author Veselka L
    Journal Sensors
    Pages 6864
    Link Publication
  • 2021
    Title Retinal adaptive optics imaging with a pyramid wavefront sensor
    DOI 10.1364/boe.438915
    Type Journal Article
    Author Brunner E
    Journal Biomedical Optics Express
    Pages 5969-5990
    Link Publication
  • 2021
    Title Convergence Rates of First- and Higher-Order Dynamics for Solving Linear Ill-Posed Problems
    DOI 10.1007/s10208-021-09536-6
    Type Journal Article
    Author Bot R
    Journal Foundations of Computational Mathematics
    Pages 1567-1629
    Link Publication
  • 2021
    Title Fourier reconstruction for diffraction tomography of an object rotated into arbitrary orientations
    DOI 10.1088/1361-6420/ac2749
    Type Journal Article
    Author Kirisits C
    Journal Inverse Problems
    Pages 115002
    Link Publication
  • 2021
    Title An augmented wavelet reconstructor for atmospheric tomography
    DOI 10.1553/etna_vol54s256
    Type Journal Article
    Author Ramlau R
    Journal ETNA - Electronic Transactions on Numerical Analysis
  • 2021
    Title Challenges for Optical Flow Estimates in Elastography; In: Scale Space and Variational Methods in Computer Vision - 8th International Conference, SSVM 2021, Virtual Event, May 16-20, 2021, Proceedings
    DOI 10.1007/978-3-030-75549-2_11
    Type Book Chapter
    Publisher Springer International Publishing
  • 2021
    Title Handbook of Mathematical Models and Algorithms in Computer Vision and Imaging - Mathematical Imaging and Vision
    DOI 10.1007/978-3-030-03009-4
    Type Book
    editors Chen K, Schönlieb C, Tai X, Younces L
    Publisher Springer International Publishing
  • 2020
    Title Displacement field estimation from OCT images utilizing speckle information with applications in quantitative elastography
    DOI 10.1088/1361-6420/abaf65
    Type Journal Article
    Author Sherina E
    Journal Inverse Problems
    Pages 124003
    Link Publication
  • 2018
    Title A Semiblind Regularization Algorithm for Inverse Problems with Application to Image Deblurring
    DOI 10.1137/16m1101830
    Type Journal Article
    Author Buccini A
    Journal SIAM Journal on Scientific Computing
    Link Publication
  • 2018
    Title A Range Condition for Polyconvex Variational Regularization
    DOI 10.1080/01630563.2018.1467447
    Type Journal Article
    Author Kirisits C
    Journal Numerical Functional Analysis and Optimization
    Pages 1064-1076
    Link Publication
  • 2018
    Title Nonlinear wavefront reconstruction methods for pyramid sensors using Landweber and Landweber-Kaczmarz iterations.
    DOI 10.1364/ao.57.008790
    Type Journal Article
    Author Hutterer V
    Journal Applied optics
    Pages 8790-8804
    Link Publication
  • 2018
    Title Limited-angle acousto-electrical tomography
    DOI 10.1080/17415977.2018.1512983
    Type Journal Article
    Author Hubmer S
    Journal Inverse Problems in Science and Engineering
    Pages 1298-1317
    Link Publication
  • 2018
    Title Nesterov’s accelerated gradient method for nonlinear ill-posed problems with a locally convex residual functional
    DOI 10.1088/1361-6420/aacebe
    Type Journal Article
    Author Hubmer S
    Journal Inverse Problems
    Pages 095003
    Link Publication
  • 2018
    Title The first 100 years of the Radon transform
    DOI 10.1088/1361-6420/aacf27
    Type Journal Article
    Author Ramlau R
    Journal Inverse Problems
    Pages 090201
    Link Publication
  • 2019
    Title Preconditioning inverse problems for hyperbolic equations with applications to photoacoustic tomography
    DOI 10.1088/1361-6420/ab3d08
    Type Journal Article
    Author Beigl A
    Journal Inverse Problems
    Pages 014002
    Link Publication
  • 2019
    Title Model-based compensation of pixel crosstalk in liquid crystal spatial light modulators.
    DOI 10.1364/oe.27.025046
    Type Journal Article
    Author Moser S
    Journal Optics express
    Pages 25046-25063
    Link Publication
  • 2018
    Title Advanced wavefront reconstruction methods for segmented Extremely Large Telescope pupils using pyramid sensors
    DOI 10.1117/1.jatis.4.4.049005
    Type Journal Article
    Author Hutterer V
    Journal Journal of Astronomical Telescopes, Instruments, and Systems
    Pages 049005-049005
    Link Publication
  • 2018
    Title Point spread function reconstruction for single-conjugate adaptive optics on extremely large telescopes
    DOI 10.1117/1.jatis.4.4.049003
    Type Journal Article
    Author Hofer C
    Journal Journal of Astronomical Telescopes, Instruments, and Systems
  • 2018
    Title A range condition for polyconvex variational regularization
    DOI 10.48550/arxiv.1802.05449
    Type Preprint
    Author Kirisits C
    Link Publication
  • 2018
    Title Compact akinetic swept source optical coherence tomography angiography at 1060 nm supporting a wide field of view and adaptive optics imaging modes of the posterior eye.
    DOI 10.1364/boe.9.001871
    Type Journal Article
    Author Augustin M
    Journal Biomedical optics express
    Pages 1871-1892
  • 2018
    Title Quantitative photoacoustic imaging in the acoustic regime using SPIM
    DOI 10.1088/1361-6420/aab584
    Type Journal Article
    Author Beigl A
    Journal Inverse Problems
    Pages 054003
    Link Publication
  • 2020
    Title Eigenvector models for solving the seismic inverse problem for the Helmholtz equation
    DOI 10.1093/gji/ggaa009
    Type Journal Article
    Author Faucher F
    Journal Geophysical Journal International
    Pages 394-414
    Link Publication
  • 2020
    Title Motion reconstruction for optical tomography of trapped objects
    DOI 10.1088/1361-6420/ab67db
    Type Journal Article
    Author Elbau P
    Journal Inverse Problems
    Pages 044004
    Link Publication
  • 2020
    Title A conjugate-gradient approach to the parameter estimation problem of magnetic resonance advection imaging
    DOI 10.1080/17415977.2019.1708911
    Type Journal Article
    Author Hubmer S
    Journal Inverse Problems in Science and Engineering
    Pages 1154-1165
    Link Publication
  • 2020
    Title Review on methods for wavefront reconstruction from pyramid wavefront sensor data
    DOI 10.1117/1.jatis.6.1.010901
    Type Journal Article
    Author Shatokhina I
    Journal Journal of Astronomical Telescopes, Instruments, and Systems
    Pages 010901-010901
    Link Publication
  • 2020
    Title A Data-Driven Iteratively Regularized Landweber Iteration
    DOI 10.1080/01630563.2020.1740734
    Type Journal Article
    Author Aspri A
    Journal Numerical Functional Analysis and Optimization
    Pages 1190-1227
    Link Publication
  • 2020
    Title Tomographic Inverse Problems: Theory and Applications
    DOI 10.4171/owr/2019/4
    Type Journal Article
    Author Burger M
    Journal Oberwolfach Reports
    Pages 209-303
  • 2020
    Title Verifying molecular clusters by 2-color localization microscopy and significance testing
    DOI 10.1038/s41598-020-60976-6
    Type Journal Article
    Author Arnold A
    Journal Scientific Reports
    Pages 4230
    Link Publication
  • 2020
    Title Comparing acoustic and optical forces for biomedical research
    DOI 10.1038/s42254-020-0215-3
    Type Journal Article
    Author Dholakia K
    Journal Nature Reviews Physics
    Pages 480-491
    Link Publication
  • 2020
    Title A workflow for sizing oligomeric biomolecules based on cryo single molecule localization microscopy
    DOI 10.1101/2020.08.17.253567
    Type Preprint
    Author Schneider M
    Pages 2020.08.17.253567
    Link Publication
  • 2020
    Title Unscrambling fluorophore blinking for comprehensive cluster detection via photoactivated localization microscopy
    DOI 10.1038/s41467-020-18726-9
    Type Journal Article
    Author Platzer R
    Journal Nature Communications
    Pages 4993
    Link Publication
  • 2020
    Title Regularization with metric double integrals for vector tomography
    DOI 10.1515/jiip-2019-0084
    Type Journal Article
    Author Melching M
    Journal Journal of Inverse and Ill-posed Problems
    Pages 857-875
    Link Publication
  • 2020
    Title Adjoint-state method for Hybridizable Discontinuous Galerkin discretization, application to the inverse acoustic wave problem
    DOI 10.1016/j.cma.2020.113406
    Type Journal Article
    Author Faucher F
    Journal Computer Methods in Applied Mechanics and Engineering
    Pages 113406
    Link Publication
  • 2020
    Title Data driven regularization by projection
    DOI 10.1088/1361-6420/abb61b
    Type Journal Article
    Author Aspri A
    Journal Inverse Problems
    Pages 125009
    Link Publication
  • 2020
    Title Reconstruction of the High Resolution Phase in a Closed Loop Adaptive Optics System
    DOI 10.1137/19m1258426
    Type Journal Article
    Author Ke R
    Journal SIAM Journal on Imaging Sciences
    Pages 775-806
    Link Publication
  • 2020
    Title Reconstructing the Optical Parameters of a Layered Medium with Optical Coherence Elastography
    DOI 10.1007/978-3-030-48634-1_8
    Type Book Chapter
    Author Elbau P
    Publisher Springer Nature
    Pages 105-126
  • 2020
    Title Visualizing human photoreceptor and retinal pigment epithelium cell mosaics in a single volume scan over an extended field of view with adaptive optics optical coherence tomography
    DOI 10.1364/boe.393906
    Type Journal Article
    Author Shirazi M
    Journal Biomedical Optics Express
    Pages 4520-4535
    Link Publication
  • 2020
    Title A frame decomposition of the atmospheric tomography operator
    DOI 10.1088/1361-6420/aba4fe
    Type Journal Article
    Author Hubmer S
    Journal Inverse Problems
    Pages 094001
    Link Publication
  • 2019
    Title Convergence Rates of First and Higher Order Dynamics for Solving Linear Inverse Problems
    Type Journal Article
    Author Bot
    Journal Tomographic Inverse Problems: Theory and Applications
    Pages 227-229
    Link Publication
  • 2019
    Title Convergence Rates of First and Higher Order Dynamics for Solving Linear Inverse Problems
    Type Conference Proceeding Abstract
    Author Bot R.
    Conference Oberwolfach reports
    Pages 227-229
    Link Publication
Artistic Creations
  • 2023 Link
    Title Inversion Methods for Strain and Stiffness Reconstruction in Quantitative Optical Coherence Elastography (Ekaterina Sherina)
    Type Film/Video/Animation
    Link Link
  • 2020 Link
    Title Visualizaion-1.avi
    DOI 10.6084/m9.figshare.12040209
    Type Film/Video/Animation
    Link Link
  • 2020 Link
    Title Visualization-3-compressed.avi
    DOI 10.6084/m9.figshare.12040236
    Type Film/Video/Animation
    Link Link
  • 2019 Link
    Title Quantitative PAT-OCT Elastography for Biomechanical Parameter Imaging
    DOI 10.14288/1.0387276
    Type Film/Video/Animation
    Link Link
Disseminations
  • 2021 Link
    Title Dissemination of work and interview in national newspaper
    Type A magazine, newsletter or online publication
    Link Link
  • 2023
    Title JKU Open House Talk
    Type Participation in an open day or visit at my research institution
  • 2021 Link
    Title Dissemination of work and interview in local newspaper
    Type A magazine, newsletter or online publication
    Link Link
  • 2024
    Title @the Austrian Science Festival
    Type Participation in an open day or visit at my research institution
  • 2025
    Title Traumberuf Technik (Workshops für Pupils)
    Type Participation in an activity, workshop or similar
  • 2024 Link
    Title KinderUni
    Type Participation in an activity, workshop or similar
    Link Link
Scientific Awards
  • 2025
    Title SIAM Fellow
    Type Awarded honorary membership, or a fellowship, of a learned society
    Level of Recognition Continental/International
  • 2024
    Title Best Scientific Paper Award 2024 of the PhD Programme Image-Guided Diagnosis and Therapy
    Type Research prize
    Level of Recognition Regional (any country)
  • 2020
    Title Erwin Wenzl Prize, Upper Austria
    Type Research prize
    Level of Recognition Regional (any country)
  • 2020
    Title EAIP Young Scientist Award
    Type Research prize
    Level of Recognition Continental/International
  • 2019
    Title JKU Early Research Achievement Award, Johannes Kepler University Linz
    Type Research prize
    Level of Recognition Regional (any country)
  • 2022
    Title SIAM Fellow
    Type Awarded honorary membership, or a fellowship, of a learned society
    Level of Recognition Continental/International
  • 2022
    Title EAIP Young Scientist Award
    Type Research prize
    Level of Recognition Continental/International

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