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Personalized Multiphysics Simulations for Honing Cardiac Resynchronization Therapy (PUSHCART)

Personalized Multiphysics Simulations for Honing Cardiac Resynchronization Therapy (PUSHCART)

Gernot Plank (ORCID: 0000-0002-7380-6908)
  • Grant DOI 10.55776/I2760
  • Funding program International - Multilateral Initiatives
  • Status ended
  • Start May 1, 2016
  • End December 31, 2019
  • Funding amount € 237,856

ERA-NET: ERA CoSysMed

Disciplines

Other Technical Sciences (20%); Clinical Medicine (10%); Mathematics (20%); Medical Engineering (50%)

Keywords

    Cardiac Resynchronization Therapy, Cardiac Mechanics, Cardiac Electrophysiology, Electrocardioprogram, Cardiac Conduction System

Abstract Final report

Heart failure is a major cause of death in industrialized countries. It is often associated with disturbances to the cardiac electrical conduction system, leading to abnormal cardiac activation and impaired pumping performance. Cardiac Resynchronization therapy (CRT) is a proven treatment to retard or even reverse the progress of the disease by pacing the heart in a way to reduce dyssynchrony. This necessitates implantation of a pacing device with multiple leads, but optimal lead position and optimal timing of delivery of electrical stimuli remains an open question. While it is recognized that the total activation time of the ventricles should be reduced, minimizing it alone does not improve mechanical response better than placing leads elsewhere. A significant fraction (30-50%) of patients does not respond at all to this expensive therapy, with large inter-patient variability leading to the poor results. The heart is an electrically activated mechanical fluid pump. Confounding its understanding is the feedback between physical components: Electrical events trigger mechanical contraction. Contraction causes blood flow, which is mediated by the vascular resistance. Conversely, changes in vascular resistance change blood flow and pressure in the ventricular cavities, thus altering the stresses in the ventricular walls and mechanical deformation. Deformation, in turn, affects electrical function through mechano-sensitive regulatory loops, mediated through stretch activated ionic channels and pre-stretch effects of active force generation. This project will bring together electrical, mechanical and hemodynamic function in the most detailed multiphysics, multiscale representation of the heart to date. Tightly coupled electromechanical behavior will interface to a circulatory model providing the appropriate boundary conditions to the mechanical model and form a closed circuit. Personalized models will be constructed based on imaging, noninvasive electrical measurements and hemodynamic performance. We hypothesize specific differences in wall activation that should be minimized. A complete multi-system model is needed to understand lead placement in CRT due to non-electrical factors, which have too long been ignored. Validating on detailed animal studies, retrospective and prospective studies will help us develop a predictive tool to determine optimal CRT lead placement.

Heart failure (HF) is a progressive disease with a mortality of around 50% within 3 years after first diagnosis. In many patients HF is linked to a damaged conduction system of the heart that leads to an improper activation which results in a weakened heart beat. They can be treated by cardiac synchronization therapy (CRT) which aims to restore a more normal electrical activation sequence of the heart by stimulating the heart at various locations and timings with a CRT pacemaker. However, while highly beneficial in many patients, one third of patients does not respond to the therapy. One reason for this failure is due to improper placement of the electrodes and/or the timing of delivered stimuli. We sought to use computer modelling to determine optimal electrode locations and timings. We developed sophisticated computer models of the heart which included electrical activation and mechanical contraction, both of which affected the other, and incorporated a model of circulation. We developed a coordinate system to specify position in the heart, and allowed us to develop a tool to efficiently compute electrical signals (electrograms sensed by the CRT device and ECGs registered at the body surface) based on the heart's electrical activation pattern. Experiments and computer simulations showed the effects of various CRT settings on improvement of heart function, as well as showing how disease state can affect how well the device works. Future work will include human studies to predict acute CRT response from computer modelling based clinical data, thus providing a means of tailoring optimal therapies to patients to achieve the goals of precision medicine.

Research institution(s)
  • Medizinische Universität Graz - 100%
International project participants
  • Edward Joseph Vigmond, Université Bordeaux Segalen - France
  • Titus Kühne, Universitätsklinikum Berlin - Germany
  • Frits Prinzen, Universiteit Maastricht - Netherlands
  • Joost Lumens, Universiteit Maastricht - Netherlands

Research Output

  • 1249 Citations
  • 51 Publications
  • 1 Spinouts
  • 4 Datasets & models
  • 3 Software
  • 9 Scientific Awards
  • 2 Fundings
Publications
  • 2018
    Title Towards a Computational Framework for Modeling the Impact of Aortic Coarctations Upon Left Ventricular Load
    DOI 10.3389/fphys.2018.00538
    Type Journal Article
    Author Karabelas E
    Journal Frontiers in Physiology
    Pages 538
    Link Publication
  • 2018
    Title Personalized computational modeling of left atrial geometry and transmural myofiber architecture
    DOI 10.1016/j.media.2018.04.001
    Type Journal Article
    Author Fastl T
    Journal Medical Image Analysis
    Pages 180-190
    Link Publication
  • 2016
    Title Patient-specific modeling of left ventricular electromechanics as a driver for haemodynamic analysis
    DOI 10.1093/europace/euw369
    Type Journal Article
    Author Augustin C
    Journal EP Europace
    Link Publication
  • 2020
    Title A publicly available virtual cohort of four-chamber heart meshes for cardiac electro-mechanics simulations
    DOI 10.1371/journal.pone.0235145
    Type Journal Article
    Author Strocchi M
    Journal PLOS ONE
    Link Publication
  • 2020
    Title An inverse Eikonal method for identifying ventricular activation sequences from epicardial activation maps
    DOI 10.1016/j.jcp.2020.109700
    Type Journal Article
    Author Grandits T
    Journal Journal of Computational Physics
    Pages 109700
    Link Publication
  • 2020
    Title On the Incorporation of Obstacles in a Fluid Flow Problem Using a Navier-Stokes-Brinkman Penalization Approach
    DOI 10.48550/arxiv.2009.03113
    Type Preprint
    Author Fuchsberger J
  • 2020
    Title A computationally efficient physiologically comprehensive 3D-0D closed-loop model of the heart and circulation
    DOI 10.48550/arxiv.2009.08802
    Type Preprint
    Author Augustin C
  • 2020
    Title PIEMAP: Personalized Inverse Eikonal Model from cardiac Electro-Anatomical Maps
    DOI 10.48550/arxiv.2008.10724
    Type Preprint
    Author Grandits T
  • 2020
    Title openCARP: An Open Sustainable Framework for In-Silico Cardiac Electrophysiology Research
    DOI 10.22489/cinc.2020.111
    Type Conference Proceeding Abstract
    Author Sánchez J
    Pages 1-4
    Link Publication
  • 2022
    Title Exploring Role of Accessory Pathway Location in Wolff-Parkinson-White Syndrome in a Model of Whole Heart Electrophysiology
    DOI 10.22489/cinc.2022.057
    Type Conference Proceeding Abstract
    Author Gillette K
    Pages 1-4
  • 2021
    Title A computationally efficient physiologically comprehensive 3D–0D closed-loop model of the heart and circulation
    DOI 10.1016/j.cma.2021.114092
    Type Journal Article
    Author Augustin C
    Journal Computer Methods in Applied Mechanics and Engineering
    Pages 114092
    Link Publication
  • 2021
    Title An automated near-real time computational method for induction and treatment of scar-related ventricular tachycardias
    DOI 10.48550/arxiv.2108.13194
    Type Preprint
    Author Campos F
  • 2021
    Title Automated Framework for the Inclusion of a His–Purkinje System in Cardiac Digital Twins of Ventricular Electrophysiology
    DOI 10.1007/s10439-021-02825-9
    Type Journal Article
    Author Gillette K
    Journal Annals of Biomedical Engineering
    Pages 3143-3153
    Link Publication
  • 2021
    Title A coupling strategy for a 3D-1D model of the cardiovascular system to study the effects of pulse wave propagation on cardiac function
    DOI 10.48550/arxiv.2111.05683
    Type Preprint
    Author Caforio F
  • 2021
    Title An accurate, robust, and efficient finite element framework for anisotropic, nearly and fully incompressible elasticity
    DOI 10.48550/arxiv.2111.00612
    Type Preprint
    Author Karabelas E
  • 2021
    Title GEASI: Geodesic-based Earliest Activation Sites Identification in cardiac models
    DOI 10.48550/arxiv.2102.09962
    Type Preprint
    Author Grandits T
  • 2021
    Title GEASI: Geodesic-based earliest activation sites identification in cardiac models
    DOI 10.1002/cnm.3505
    Type Journal Article
    Author Grandits T
    Journal International Journal for Numerical Methods in Biomedical Engineering
    Link Publication
  • 2021
    Title Learning Atrial Fiber Orientations and Conductivity Tensors from Intracardiac Maps Using Physics-Informed Neural Networks
    DOI 10.1007/978-3-030-78710-3_62
    Type Book Chapter
    Author Grandits T
    Publisher Springer Nature
    Pages 650-658
  • 2021
    Title A Framework for the generation of digital twins of cardiac electrophysiology from clinical 12-leads ECGs
    DOI 10.1016/j.media.2021.102080
    Type Journal Article
    Author Gillette K
    Journal Medical Image Analysis
    Pages 102080
    Link Publication
  • 2020
    Title Automating image-based mesh generation and manipulation tasks in cardiac modeling workflows using Meshtool
    DOI 10.1016/j.softx.2020.100454
    Type Journal Article
    Author Neic A
    Journal SoftwareX
    Pages 100454
    Link Publication
  • 2020
    Title Personalization of electro-mechanical models of the pressure-overloaded left ventricle: fitting of Windkessel-type afterload models
    DOI 10.1098/rsta.2019.0342
    Type Journal Article
    Author Marx L
    Journal Philosophical Transactions of the Royal Society A
    Pages 20190342
    Link Publication
  • 2019
    Title Versatile stabilized finite element formulations for nearly and fully incompressible solid mechanics
    DOI 10.48550/arxiv.1910.08938
    Type Preprint
    Author Karabelas E
  • 2022
    Title An automated near-real time computational method for induction and treatment of scar-related ventricular tachycardias
    DOI 10.1016/j.media.2022.102483
    Type Journal Article
    Author Campos F
    Journal Medical Image Analysis
    Pages 102483
    Link Publication
  • 2022
    Title An accurate, robust, and efficient finite element framework with applications to anisotropic, nearly and fully incompressible elasticity
    DOI 10.1016/j.cma.2022.114887
    Type Journal Article
    Author Karabelas E
    Journal Computer Methods in Applied Mechanics and Engineering
    Pages 114887
    Link Publication
  • 2022
    Title Global Sensitivity Analysis of Four Chamber Heart Hemodynamics Using Surrogate Models
    DOI 10.1109/tbme.2022.3163428
    Type Journal Article
    Author Karabelas E
    Journal IEEE Transactions on Biomedical Engineering
    Pages 3216-3223
    Link Publication
  • 2021
    Title PIEMAP: Personalized Inverse Eikonal Model from Cardiac Electro-Anatomical Maps
    DOI 10.1007/978-3-030-68107-4_8
    Type Book Chapter
    Author Grandits T
    Publisher Springer Nature
    Pages 76-86
    Link Publication
  • 2020
    Title Computational modeling of cardiac growth and remodeling in pressure overloaded hearts—Linking microstructure to organ phenotype
    DOI 10.1016/j.actbio.2020.02.010
    Type Journal Article
    Author Niestrawska J
    Journal Acta Biomaterialia
    Pages 34-53
    Link Publication
  • 2020
    Title Computational Modeling of Cardiac Growth and Remodeling in Pressure Overloaded Hearts -- Linking Microstructure to Organ Phenotype
    DOI 10.48550/arxiv.2003.00776
    Type Preprint
    Author Niestrawska J
  • 2020
    Title Data preprocessing, detailed methodolgy and additional results from Personalization of electro-mechanical models of the pressure-overloaded left ventricle: fitting of Windkessel-type afterload models
    DOI 10.6084/m9.figshare.12185673
    Type Other
    Author Gsell M
    Link Publication
  • 2023
    Title A personalized real-time virtual model of whole heart electrophysiology
    DOI 10.1093/europace/euad122.541
    Type Journal Article
    Author Gillette K
    Journal Europace
    Link Publication
  • 2021
    Title Influence of Electrode Placement on the Morphology of In Silico 12 Lead Electrocardiograms
    DOI 10.23919/cinc53138.2021.9662705
    Type Conference Proceeding Abstract
    Author Gillette K
    Pages 1-4
  • 2021
    Title Determining anatomical and electrophysiological detail requirements for computational ventricular models of porcine myocardial infarction
    DOI 10.1016/j.compbiomed.2021.105061
    Type Journal Article
    Author Costa C
    Journal Computers in Biology and Medicine
    Pages 105061
    Link Publication
  • 2021
    Title Global Sensitivity Analysis of Four Chamber Heart Hemodynamics Using Surrogate Models
    DOI 10.48550/arxiv.2111.08339
    Type Preprint
    Author Karabelas E
  • 2022
    Title A coupling strategy for a first 3D-1D model of the cardiovascular system to study the effects of pulse wave propagation on cardiac function
    DOI 10.1007/s00466-022-02206-6
    Type Journal Article
    Author Caforio F
    Journal Computational Mechanics
    Pages 703-722
    Link Publication
  • 2022
    Title An Integrated Workflow for Building Digital Twins of Cardiac Electromechanics—A Multi-Fidelity Approach for Personalising Active Mechanics
    DOI 10.3390/math10050823
    Type Journal Article
    Author Jung A
    Journal Mathematics
    Pages 823
    Link Publication
  • 2022
    Title On the incorporation of obstacles in a fluid flow problem using a Navier–Stokes–Brinkman penalization approach
    DOI 10.1016/j.jocs.2021.101506
    Type Journal Article
    Author Fuchsberger J
    Journal Journal of Computational Science
    Pages 101506
    Link Publication
  • 2023
    Title A Framework for the generation of digital twins of cardiac electrophysiology from clinical 12-leads ECGs
    DOI 10.5281/zenodo.7944373
    Type Journal Article
    Author Gillette K
    Link Publication
  • 2023
    Title A Framework for the generation of digital twins of cardiac electrophysiology from clinical 12-leads ECGs
    DOI 10.5281/zenodo.7944372
    Type Journal Article
    Author Gillette K
    Link Publication
  • 2023
    Title Influence of Electrode Placement on the Morphology of In Silico 12 Lead Electrocardiograms
    DOI 10.5281/zenodo.7941047
    Type Journal Article
    Author Gillette K
    Link Publication
  • 2023
    Title Automated Framework for the Inclusion of a His-Purkinje System in Cardiac Digital Twins of Ventricular Electrophysiology
    DOI 10.5281/zenodo.7944266
    Type Journal Article
    Author Gillette K
    Link Publication
  • 2023
    Title Automated Framework for the Inclusion of a His-Purkinje System in Cardiac Digital Twins of Ventricular Electrophysiology
    DOI 10.5281/zenodo.7944267
    Type Journal Article
    Author Gillette K
    Link Publication
  • 2023
    Title Influence of Electrode Placement on the Morphology of In Silico 12 Lead Electrocardiograms
    DOI 10.5281/zenodo.7941046
    Type Journal Article
    Author Gillette K
    Link Publication
  • 2020
    Title Simulating ventricular systolic motion in a four-chamber heart model with spatially varying robin boundary conditions to model the effect of the pericardium
    DOI 10.1016/j.jbiomech.2020.109645
    Type Journal Article
    Author Strocchi M
    Journal Journal of Biomechanics
    Pages 109645
    Link Publication
  • 2019
    Title Versatile stabilized finite element formulations for nearly and fully incompressible solid mechanics
    DOI 10.1007/s00466-019-01760-w
    Type Journal Article
    Author Karabelas E
    Journal Computational Mechanics
    Pages 193-215
    Link Publication
  • 2019
    Title Towards a Computational Framework for Modeling the Impact of Aortic Coarctations upon Left Ventricular Load
    DOI 10.48550/arxiv.1901.05339
    Type Preprint
    Author Karabelas E
  • 2019
    Title Assessment of wall stresses and mechanical heart power in the left ventricle: Finite element modeling versus Laplace analysis
    DOI 10.48550/arxiv.1901.05337
    Type Preprint
    Author Gsell M
  • 2018
    Title Universal ventricular coordinates: A generic framework for describing position within the heart and transferring data
    DOI 10.1016/j.media.2018.01.005
    Type Journal Article
    Author Bayer J
    Journal Medical Image Analysis
    Pages 83-93
    Link Publication
  • 2018
    Title Assessment of wall stresses and mechanical heart power in the left ventricle: Finite element modeling versus Laplace analysis
    DOI 10.1002/cnm.3147
    Type Journal Article
    Author Gsell M
    Journal International Journal for Numerical Methods in Biomedical Engineering
    Link Publication
  • 2019
    Title The Left and Right Ventricles Respond Differently to Variation of Pacing Delays in Cardiac Resynchronization Therapy: A Combined Experimental- Computational Approach
    DOI 10.3389/fphys.2019.00017
    Type Journal Article
    Author Willemen E
    Journal Frontiers in Physiology
    Pages 17
    Link Publication
  • 2019
    Title The impact of wall thickness and curvature on wall stress in patient-specific electromechanical models of the left atrium
    DOI 10.1007/s10237-019-01268-5
    Type Journal Article
    Author Augustin C
    Journal Biomechanics and Modeling in Mechanobiology
    Pages 1015-1034
    Link Publication
  • 2017
    Title Efficient computation of electrograms and ECGs in human whole heart simulations using a reaction-eikonal model
    DOI 10.1016/j.jcp.2017.06.020
    Type Journal Article
    Author Neic A
    Journal Journal of Computational Physics
    Pages 191-211
    Link Publication
Spinouts
  • 2018 Link
    Title NumeriCor GmbH
    Link Link
Datasets & models
  • 2020 Link
    Title Anatomically Detailed Human Atrial FE Meshes
    DOI 10.5281/zenodo.3843659
    Type Database/Collection of data
    Public Access
    Link Link
  • 2020 Link
    Title Anatomically Detailed Human Atrial FE Meshes
    DOI 10.5281/zenodo.3843215
    Type Database/Collection of data
    Public Access
    Link Link
  • 2020 Link
    Title Anatomically Detailed Human Atrial FE Meshes
    DOI 10.5281/zenodo.3843216
    Type Database/Collection of data
    Public Access
    Link Link
  • 2019 Link
    Title Cardiac Anatomy Model Repository
    Type Database/Collection of data
    Public Access
    Link Link
Software
  • 2019 Link
    Title carpUtils
    Link Link
  • 2019 Link
    Title meshTool
    Link Link
  • 2019 Link
    Title openCARP
    Link Link
Scientific Awards
  • 2019
    Title Keynote Workshop in Industrial Mathematics, Reduced-Order Modeling, Simulation and Optimization of Coupled Systems; Oct 14-17, 2019; Strobl, Austria.
    Type Personally asked as a key note speaker to a conference
    Level of Recognition Continental/International
  • 2019
    Title Keynote 41st Engineering in Medicine and Biology Conference 2019 Berlin; July 23-27, 2019; Berlin, Germany
    Type Personally asked as a key note speaker to a conference
    Level of Recognition Continental/International
  • 2019
    Title Keynote Riemann International School of Mathematics (RISM) Congress: Modelling the Cardiac Function - iHEART, on "Personalizing models of total heart function", Varese, Italy July 22-24, 2019.
    Type Personally asked as a key note speaker to a conference
    Level of Recognition Continental/International
  • 2019
    Title Invited Lecture 0th TRM Forum on Computer Simulation and Experimental Assessment of Cardiac Function; December 8-10, 2019; Lugano, Switzerland. 2019
    Type Personally asked as a key note speaker to a conference
    Level of Recognition Continental/International
  • 2019
    Title Invited Lecture Isaac Newton Institute of Mathematical Science - The Fickle Heart; May 13 - June 7, 2019; Cambridge, UK. 2019
    Type Personally asked as a key note speaker to a conference
    Level of Recognition Continental/International
  • 2018
    Title Keynote Multiscale Hard and Soft Tissue Modelling Workshop, Insigneo Institute, Sheffield, UK, June 18-20, 2018
    Type Personally asked as a key note speaker to a conference
    Level of Recognition Continental/International
  • 2018
    Title Keynote 8th World Congress of Biomechanics, Session on Cardiac Electromechanics, Dublin, Ireland, July 8-12, 2018
    Type Personally asked as a key note speaker to a conference
    Level of Recognition Continental/International
  • 2018
    Title Keynote Conference on Mathematical and Numerical Modeling of the Cardiovascular System", Istituto Nazionale di Alta Matematica (INDAM), University of Rome, Rome, Italy, April 16-20, 2018.
    Type Personally asked as a key note speaker to a conference
    Level of Recognition Continental/International
  • 2017
    Title Plenary Lecture Conference on Mathematical methods in cardiac electrophysiology, Fields Institute, Ottawa, Canada, Nov 4-6, 2017
    Type Personally asked as a key note speaker to a conference
    Level of Recognition Continental/International
Fundings
  • 2019
    Title Metrology of automated data analysis for cardiac arrhythmia management
    Type Research grant (including intramural programme)
    Start of Funding 2019
    Funder European Association of National Metrology Institutes (EURAMET)
  • 2020
    Title ERA-CVD Joint Transnational Call 2019
    Type Research grant (including intramural programme)
    Start of Funding 2020
    Funder Austrian Science Fund (FWF)

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