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Regulation of RGG-mediated Nuclear Import

Regulation of RGG-mediated Nuclear Import

Tobias Madl (ORCID: 0000-0002-9725-5231)
  • Grant DOI 10.55776/I3792
  • Funding program Principal Investigator Projects International
  • Status ended
  • Start July 1, 2018
  • End February 28, 2022
  • Funding amount € 203,214
  • E-mail

DACH: Österreich - Deutschland - Schweiz

Disciplines

Biology (100%)

Keywords

    NMR spectroscopy, Nuclear Import, CIRP, FUS, Transportin-1, Small-angle scattering

Abstract Final report

Motifs rich in arginine and glycine residues were recognized several decades ago to play functional roles in RNA- binding and were termed RG/RGG motifs. More than 1000 proteins harbor the intrinsically disordered RG/RGG motif, and these proteins play essential roles in a plethora of physiological processes such as transcription, pre- mRNA splicing, DNA damage signaling and mRNA translation. Recently, we have shown that the RG/RGG-motif of the protein Fused-in-Sarcoma (FUS) is involved in transportin-1 mediated nuclear import, and that transportin-1 can bind both, the known proline-tyrosine nuclear localization signal (PY-NLS) and the RG/RGG- motif of FUS simultaneously. Arginine methylation of the RG/RGG motif in combination with mutations found in Amyotrophic Lateral Sclerosis (ALS) patients decrease the affinity of FUS for transportin-1 and reduces the efficiency of nuclear import. The resulting cytosolic inclusions are probably the hallmark of FUS-associated ALS disease. Despite these findings, the molecular details of regulated nuclear transport of RG/RGG-containing proteins remain unknown. In this project, we aim to reveal molecular details of (mis)regulated nuclear import of the large class of proteins rich in RG/RGG repeats by studying interactions and function of the complexes of FUS and CIRP (cold-inducible RNA-binding protein) with the nuclear import receptor transportin-1 in vitro and in cell-based assays. Given that misregulation of nuclear import linked to RG/RGG motifs is a common feature of severe human diseases such as cancers and neurodegeneration, detailed understanding of the underlying molecular mechanisms is the key for the development of alternative strategies for disease treatment. This project aims towards generalizing our recent findings to the entire class of RG/RGG-containing proteins. This will set the base for the discovery of new potential druggable targets for the treatment of a plethora of diseases with different phenotypes, though caused by the same molecular disease mechanisms (i.e. misregulation of RG/RGG-mediated nuclear import).

Motifs rich in arginine and glycine residues were recognized several decades ago to play functional roles in RNA-binding and were termed RG/RGG motifs. More than 1000 proteins harbor the intrinsically disordered RG/RGG motif, and these proteins play essential roles in a plethora of physiological processes such as transcription, pre-mRNA splicing, DNA damage signaling and mRNA translation. Recently, we have shown that the RG/RGG-motif of the protein Fused-in-Sarcoma (FUS) is involved in transportin-1 mediated nuclear import, and that transportin-1 can bind both, the known proline-tyrosine nuclear localization signal (PY- NLS) and the RG/RGG-motif of FUS simultaneously. Arginine methylation of the RG/RGG motif in combination with mutations found in Amyotrophic Lateral Sclerosis (ALS) patients decrease the affinity of FUS for transportin-1 and reduces the efficiency of nuclear import. The resulting cytosolic inclusions are probably the hallmark of FUS-associated ALS disease. Despite these findings, the molecular details of regulated nuclear transport of RG/RGG- containing proteins remain unknown. In this project, we revealed the molecular details of (mis)regulated nuclear import of the large class of proteins rich in RG/RGG repeats by studying interactions and function of the complexes of FUS and CIRP (cold-inducible RNA-binding protein) with the nuclear import receptor transportin-1 in vitro and in cell-based assays. Given that misregulation of nuclear import linked to RG/RGG motifs is a common feature of severe human diseases such as cancers and neurodegeneration, detailed understanding of the underlying molecular mechanisms is the key for the development of alternative strategies for disease treatment. This project is an important contribution towards generalizing our findings to the entire class of RG/RGG-containing proteins. This will set the base for the discovery of new potential druggable targets for the treatment of a plethora of diseases with different phenotypes, though caused by the same molecular disease mechanisms (i.e. misregulation of RG/RGG-mediated nuclear import).

Research institution(s)
  • Medizinische Universität Graz - 100%
International project participants
  • Michael Sattler, Technische Universität München - Germany

Research Output

  • 1811 Citations
  • 132 Publications
  • 1 Policies
  • 1 Methods & Materials
  • 3 Disseminations
  • 1 Scientific Awards
  • 1 Fundings
Publications
  • 2025
    Title Biodegradable ultrahigh-purity magnesium and its alloy ZX00 promote osteogenesis in the medullary cavity and glycogenolysis in the liver
    DOI 10.1016/j.actbio.2025.02.007
    Type Journal Article
    Author Okutan B
    Journal Acta Biomaterialia
    Pages 599-613
    Link Publication
  • 2024
    Title Expanding the cultivable human archaeome: Methanobrevibacter intestini sp. nov. and strain Methanobrevibacter smithii “GRAZ-2” from human feces
    DOI 10.1101/2024.05.15.594450
    Type Preprint
    Author Weinberger V
    Pages 2024.05.15.594450
    Link Publication
  • 2025
    Title Structural basis of phosphorylation-independent nuclear import of CIRBP by TNPO3
    DOI 10.1038/s41467-025-59802-2
    Type Journal Article
    Author Zhou Q
    Journal Nature Communications
    Pages 4456
    Link Publication
  • 2025
    Title Expanding the cultivable human archaeome: Methanobrevibacter intestini sp. nov. and strain Methanobrevibacter smithii 'GRAZ-2' from human faeces.
    DOI 10.1099/ijsem.0.006751
    Type Journal Article
    Author Weinberger V
    Journal International journal of systematic and evolutionary microbiology
  • 2020
    Title Tin-Doped Near-Infrared Persistent Luminescence Nanoparticles with Considerable Improvement of Biological Window Activation for Deep Tumor Photodynamic Therapy
    DOI 10.1021/acsabm.0c00644
    Type Journal Article
    Author Shi J
    Journal ACS Applied Bio Materials
    Pages 5995-6004
    Link Publication
  • 2020
    Title N-acetylaspartate improves cell survival when glucose is limiting
    DOI 10.1101/2020.05.28.114629
    Type Preprint
    Author Alkan H
    Pages 2020.05.28.114629
    Link Publication
  • 2019
    Title Purification and Application of Genetically Encoded Potassium Ion Indicators for Quantification of Potassium Ion Concentrations within Biological Samples
    DOI 10.1002/cpch.71
    Type Journal Article
    Author Bischof H
    Journal Current Protocols in Chemical Biology
    Link Publication
  • 2021
    Title Dietary spermidine improves cognitive function
    DOI 10.17169/refubium-31292
    Type Other
    Author Hofer S
    Link Publication
  • 2021
    Title Imbalances in the eye lens proteome are linked to cataract formation.
    DOI 10.1038/s41594-020-00543-9
    Type Journal Article
    Author Lim Nch
    Journal Nature structural & molecular biology
    Pages 143-151
  • 2021
    Title Metabolomic Profiles of Mice Tissues Reveals an Interplay Between Aging and Energy Metabolism
    DOI 10.20944/preprints202112.0120.v1
    Type Preprint
    Author Zhou Q
    Link Publication
  • 2021
    Title Phosphorylation Regulates CIRBP Arginine Methylation, Transportin-1 Binding and Liquid-Liquid Phase Separation
    DOI 10.3389/fmolb.2021.689687
    Type Journal Article
    Author Lenard A
    Journal Frontiers in Molecular Biosciences
    Pages 689687
    Link Publication
  • 2021
    Title Exploring the Arginine Methylome by Nuclear Magnetic Resonance Spectroscopy.
    DOI 10.3791/63245
    Type Journal Article
    Author Habisch H
    Journal Journal of visualized experiments : JoVE
  • 2021
    Title XIAP restrains TNF-driven intestinal inflammation and dysbiosis by promoting innate immune responses of Paneth and dendritic cells
    DOI 10.1126/sciimmunol.abf7235
    Type Journal Article
    Author Wahida A
    Journal Science Immunology
  • 2021
    Title p53 Transactivation Domain Mediates Binding and Phase Separation with Poly-PR/GR
    DOI 10.3390/ijms222111431
    Type Journal Article
    Author Usluer S
    Journal International Journal of Molecular Sciences
    Pages 11431
    Link Publication
  • 2022
    Title Acinar-to-ductal metaplasia in the pancreas requires a glycolytic switch and functional mitochondria
    DOI 10.1101/2022.06.27.495427
    Type Preprint
    Author Neuß T
    Pages 2022.06.27.495427
    Link Publication
  • 2022
    Title Brain regions show different metabolic and protein arginine methylation phenotypes in frontotemporal dementias and Alzheimer’s disease
    DOI 10.1016/j.pneurobio.2022.102400
    Type Journal Article
    Author Zhang F
    Journal Progress in Neurobiology
    Pages 102400
    Link Publication
  • 2022
    Title Residual Humidity in Paraffin Embedded Tissue Reduces Nucleic Acid Stability
    DOI 10.20944/preprints202212.0457.v1
    Type Preprint
    Author Abuja P
    Link Publication
  • 2022
    Title Efficacy and Safety of Intermittent Fasting in People With Insulin-Treated Type 2 Diabetes (INTERFAST-2)—A Randomized Controlled Trial
    DOI 10.2337/dc22-1622
    Type Journal Article
    Author Obermayer A
    Journal Diabetes Care
    Pages 463-468
    Link Publication
  • 2022
    Title The sex-specific metabolic signature of C57BL/6NRj mice during aging
    DOI 10.60692/9x7pr-z5m82
    Type Other
    Author Doruntina Bresilla
    Link Publication
  • 2022
    Title Lipoprotein Subclasses Independently Contribute to Subclinical Variance of Microvascular and Macrovascular Health
    DOI 10.5451/unibas-ep93888
    Type Other
    Author Habisch
    Link Publication
  • 2021
    Title Intracellular drug binding affinities by NMR
    DOI 10.1107/s2059798321010135
    Type Journal Article
    Author Madl T
    Journal Acta Crystallographica Section D
    Pages 1216-1217
    Link Publication
  • 2021
    Title Reduced B12 uptake and increased gastrointestinal formate are associated with archaeome-mediated breath methane emission in humans
    DOI 10.1186/s40168-021-01130-w
    Type Journal Article
    Author Kumpitsch C
    Journal Microbiome
    Pages 193
    Link Publication
  • 2021
    Title A General Small-Angle X-ray Scattering-Based Screening Protocol for Studying Physical Stability of Protein Formulations
    DOI 10.3390/pharmaceutics14010069
    Type Journal Article
    Author Zhang F
    Journal Pharmaceutics
    Pages 69
    Link Publication
  • 2021
    Title Metabolomic Profiles of Mouse Tissues Reveal an Interplay between Aging and Energy Metabolism
    DOI 10.3390/metabo12010017
    Type Journal Article
    Author Zhou Q
    Journal Metabolites
    Pages 17
    Link Publication
  • 2020
    Title Metabolic reprogramming of donor T cells enhances graft-versus-leukemia effects in mice and humans
    DOI 10.1126/scitranslmed.abb8969
    Type Journal Article
    Author Uhl F
    Journal Science Translational Medicine
    Link Publication
  • 2019
    Title Increased Aggregation Tendency of Alpha-Synuclein in a Fully Disordered Protein Complex
    DOI 10.1016/j.jmb.2019.04.031
    Type Journal Article
    Author Merle D
    Journal Journal of Molecular Biology
    Pages 2581-2598
  • 2019
    Title Serum Concentrations of Citrate, Tyrosine, 2- and 3- Hydroxybutyrate are Associated with Increased 3-Month Mortality in Acute Heart Failure Patients
    DOI 10.1038/s41598-019-42937-w
    Type Journal Article
    Author Stryeck S
    Journal Scientific Reports
    Pages 6743
    Link Publication
  • 2019
    Title Cysteine oxidation triggers amyloid fibril formation of the tumor suppressor p16INK4A
    DOI 10.1101/509109
    Type Preprint
    Author Göbl C
    Pages 509109
    Link Publication
  • 2019
    Title The Co-chaperone Cns1 and the Recruiter Protein Hgh1 Link Hsp90 to Translation Elongation via Chaperoning Elongation Factor 2
    DOI 10.1016/j.molcel.2019.02.011
    Type Journal Article
    Author Schopf F
    Journal Molecular Cell
    Link Publication
  • 2019
    Title pH-Lemon, a Fluorescent Protein-Based pH Reporter for Acidic Compartments
    DOI 10.1021/acssensors.8b01599
    Type Journal Article
    Author Burgstaller S
    Journal ACS Sensors
    Pages 883-891
    Link Publication
  • 2024
    Title Alteration of the Gut–Lung Axis After Severe COVID-19 Infection and Modulation Through Probiotics: A Randomized, Controlled Pilot Study
    DOI 10.3390/nu16223840
    Type Journal Article
    Author Horvath A
    Journal Nutrients
    Pages 3840
    Link Publication
  • 2024
    Title Impaired HDL antioxidant and anti-inflammatory functions are linked to increased mortality in acute heart failure patients
    DOI 10.1016/j.redox.2024.103341
    Type Journal Article
    Author Pammer A
    Journal Redox Biology
    Pages 103341
    Link Publication
  • 2024
    Title Targeting organ-specific mitochondrial dysfunction to improve biological aging
    DOI 10.1016/j.pharmthera.2024.108710
    Type Journal Article
    Author Madreiter-Sokolowski C
    Journal Pharmacology & Therapeutics
    Pages 108710
    Link Publication
  • 2024
    Title Probiotic Therapy of Gastrointestinal Symptoms During COVID-19 Infection: A Randomized, Double-Blind, Placebo-Controlled, Remote Study
    DOI 10.3390/nu16223970
    Type Journal Article
    Author Horvath A
    Journal Nutrients
    Pages 3970
    Link Publication
  • 2024
    Title Effects of dietary interventions and intermittent fasting on HDL function in obese individuals with T2DM: a randomized controlled trial
    DOI 10.1186/s12933-024-02426-5
    Type Journal Article
    Author Pammer A
    Journal Cardiovascular Diabetology
    Pages 339
    Link Publication
  • 2024
    Title IGF2BP1 phosphorylation in the disordered linkers regulates ribonucleoprotein condensate formation and RNA metabolism
    DOI 10.1038/s41467-024-53400-4
    Type Journal Article
    Author Hornegger H
    Journal Nature Communications
    Pages 9054
    Link Publication
  • 2024
    Title Sirtuin 3 drives sex-specific responses to age-related changes in mouse embryonic fibroblasts
    DOI 10.1016/j.mad.2024.111996
    Type Journal Article
    Author Šimunic E
    Journal Mechanisms of Ageing and Development
    Pages 111996
  • 2024
    Title Sex-Related Differences in the Associations between Adiponectin and Serum Lipoproteins in Healthy Subjects and Patients with Metabolic Syndrome
    DOI 10.3390/biomedicines12091972
    Type Journal Article
    Author Klobucar I
    Journal Biomedicines
    Pages 1972
    Link Publication
  • 2024
    Title PROVIT-CLOCK: A Potential Influence of Probiotics and Vitamin B7 Add-On Treatment and Metabolites on Clock Gene Expression in Major Depression
    DOI 10.1159/000538781
    Type Journal Article
    Author Kreuzer K
    Journal Neuropsychobiology
    Pages 135-151
    Link Publication
  • 2024
    Title Lanifibranor Reduces Inflammation and Improves Dyslipidemia in Lysosomal Acid Lipase-Deficient Mice
    DOI 10.1016/j.gastha.2024.05.006
    Type Journal Article
    Author Bradic I
    Journal Gastro Hep Advances
    Pages 711-723
    Link Publication
  • 2021
    Title Metabolic profiling links cardiovascular risk and vascular end organ damage
    DOI 10.1016/j.atherosclerosis.2021.07.005
    Type Journal Article
    Author Streese L
    Journal Atherosclerosis
    Pages 45-53
    Link Publication
  • 2021
    Title Multiple regulatory intrinsically disordered motifs control FOXO4 transcription factor binding and function
    DOI 10.1016/j.celrep.2021.109446
    Type Journal Article
    Author Bourgeois B
    Journal Cell Reports
    Pages 109446
    Link Publication
  • 2021
    Title p53 Transactivation Domain Mediates Binding and Phase Separation With poly-PR/GR
    DOI 10.20944/preprints202109.0265.v1
    Type Preprint
    Author Usluer S
    Link Publication
  • 2021
    Title Branched-Chain Amino Acids Can Predict Mortality in ICU Sepsis Patients
    DOI 10.3390/nu13093106
    Type Journal Article
    Author Reisinger A
    Journal Nutrients
    Pages 3106
    Link Publication
  • 2021
    Title Wide-Range, Rapid, and Specific Identification of Pathogenic Bacteria by Surface-Enhanced Raman Spectroscopy
    DOI 10.1021/acssensors.1c00641
    Type Journal Article
    Author Liu S
    Journal ACS Sensors
    Pages 2911-2919
    Link Publication
  • 2021
    Title Lysophosphatidic Acid Induces Aerobic Glycolysis, Lipogenesis, and Increased Amino Acid Uptake in BV-2 Microglia
    DOI 10.3390/ijms22041968
    Type Journal Article
    Author Joshi L
    Journal International Journal of Molecular Sciences
    Pages 1968
    Link Publication
  • 2021
    Title Fasting reverses drug-resistance in hepatocellular carcinoma through p53-dependent metabolic synergism
    DOI 10.1101/2021.02.10.430545
    Type Preprint
    Author Krstic J
    Pages 2021.02.10.430545
    Link Publication
  • 2021
    Title Metabolic, Phenotypic, and Neuropathological Characterization of the Tg4-42 Mouse Model for Alzheimer’s Disease
    DOI 10.3233/jad-201204
    Type Journal Article
    Author Hinteregger B
    Journal Journal of Alzheimer's Disease
    Pages 1151-1168
    Link Publication
  • 2021
    Title Global Analysis of Protein Arginine Methylation
    DOI 10.2139/ssrn.3762765
    Type Preprint
    Author Zhang F
    Link Publication
  • 2021
    Title Tissue-Specific Landscape of Metabolic Dysregulation during Ageing
    DOI 10.3390/biom11020235
    Type Journal Article
    Author Zhang F
    Journal Biomolecules
    Pages 235
    Link Publication
  • 2023
    Title Clinical NEC prevention practices drive different microbiome profiles and functional responses in the preterm intestine
    DOI 10.1038/s41467-023-36825-1
    Type Journal Article
    Author Neumann C
    Journal Nature Communications
    Pages 1349
    Link Publication
  • 2022
    Title Cholesterol Content of Very-Low-Density Lipoproteins Is Associated with 1-Year Mortality in Acute Heart Failure Patients
    DOI 10.3390/biom12101542
    Type Journal Article
    Author Degoricija V
    Journal Biomolecules
    Pages 1542
    Link Publication
  • 2022
    Title Phosphatidylethanolamine N-Methyltransferase Knockout Modulates Metabolic Changes in Aging Mice
    DOI 10.3390/biom12091270
    Type Journal Article
    Author Zhou Q
    Journal Biomolecules
    Pages 1270
    Link Publication
  • 2022
    Title Solvent paramagnetic relaxation enhancement as a versatile method for studying structure and dynamics of biomolecular systems
    DOI 10.1016/j.pnmrs.2022.09.001
    Type Journal Article
    Author Lenard A
    Journal Progress in Nuclear Magnetic Resonance Spectroscopy
    Pages 113-139
    Link Publication
  • 2022
    Title The LEF-1 high-mobility group box adopts residual structure in its DNA-free form
    DOI 10.1016/j.jmro.2022.100074
    Type Journal Article
    Author Alderson T
    Journal Journal of Magnetic Resonance Open
    Pages 100074
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  • 2022
    Title Patterns of Peripheral Blood B-Cell Subtypes Are Associated With Treatment Response in Patients Treated With Immune Checkpoint Inhibitors: A Prospective Longitudinal Pan-Cancer Study
    DOI 10.3389/fimmu.2022.840207
    Type Journal Article
    Author Barth D
    Journal Frontiers in Immunology
    Pages 840207
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  • 2018
    Title Entspannte Moleküle: NMR-Ober - flächen daten zur Strukturbestimmung
    DOI 10.1007/s12268-018-0898-5
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    Journal BIOspektrum
    Pages 161-163
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  • 2018
    Title Oxidative stress-induced structural changes in the microtubule-associated flavoenzyme Irc15p from Saccharomyces cerevisiae
    DOI 10.1002/pro.3517
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    Journal Protein Science
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  • 2018
    Title NMR spectroscopy enables simultaneous quantification of carbohydrates for diagnosis of intestinal and gastric permeability
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  • 2023
    Title “IGF2BP1 phosphorylation regulates ribonucleoprotein condensate formation by impairing low-affinity protein and RNA interactions”
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  • 2023
    Title Fecal microbiota transplantation from individual with bipolar disorder and healthy control elicits distinct behaviors and metabolite profiles in mice
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  • 2023
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  • 2023
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  • 2022
    Title Reduced olfactory performance is associated with changed microbial diversity, oralization and accumulation of dead biomaterial in the nasal olfactory area
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    Title Targeting epigenetic features in clear cell sarcomas based on patient-derived cell lines
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    Title The sex-specific metabolic signature of C57BL/6NRj mice during aging
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    Link Publication
  • 2022
    Title Brain Regions Show Different Metabolic and Protein Arginine Methylation Phenotypes in Frontotemporal Dementias and Alzheimer's Disease
    DOI 10.2139/ssrn.4195324
    Type Journal Article
    Author Rakhimbekova A
    Journal SSRN Electronic Journal
  • 2022
    Title The sex-specific metabolic signature of C57BL/6NRj mice during aging
    DOI 10.3929/ethz-b-000586504
    Type Other
    Author Bresilla
    Link Publication
  • 2021
    Title Global analysis of protein arginine methylation
    DOI 10.1016/j.crmeth.2021.100016
    Type Journal Article
    Author Zhang F
    Journal Cell Reports Methods
    Pages 100016
    Link Publication
  • 2024
    Title Millifluidic magnetophoresis-based chip for age-specific fractionation: evaluating the impact of age on metabolomics and gene expression in yeast
    DOI 10.1039/d4lc00185k
    Type Journal Article
    Author Wittmann L
    Journal Lab on a Chip
    Pages 2987-2998
    Link Publication
  • 2024
    Title Serum Levels of Adiponectin Are Strongly Associated with Lipoprotein Subclasses in Healthy Volunteers but Not in Patients with Metabolic Syndrome
    DOI 10.3390/ijms25095050
    Type Journal Article
    Author Klobucar I
    Journal International Journal of Molecular Sciences
    Pages 5050
    Link Publication
  • 2024
    Title Spermidine is essential for fasting-mediated autophagy and longevity
    DOI 10.1038/s41556-024-01468-x
    Type Journal Article
    Author Hofer S
    Journal Nature Cell Biology
    Pages 1571-1584
    Link Publication
  • 2024
    Title MetSCORE: a molecular metric to evaluate the risk of metabolic syndrome based on serum NMR metabolomics
    DOI 10.1186/s12933-024-02363-3
    Type Journal Article
    Author Gil-Redondo R
    Journal Cardiovascular Diabetology
    Pages 272
    Link Publication
  • 2024
    Title Metabolic Reprogramming Is an Initial Step in Pancreatic Carcinogenesis That Can Be Targeted to Inhibit Acinar-to-Ductal Metaplasia.
    DOI 10.1158/0008-5472.can-23-2213
    Type Journal Article
    Author Neuß T
    Journal Cancer research
    Pages 2297-2312
  • 2024
    Title Skeletal muscle p53-depletion uncovers a mechanism of fuel usage suppression that enables efficient energy conservation
    DOI 10.1002/jcsm.13529
    Type Journal Article
    Author Lenihan-Geels G
    Journal Journal of Cachexia, Sarcopenia and Muscle
    Pages 1772-1784
    Link Publication
  • 2024
    Title Hexokinase 1 forms rings that regulate mitochondrial fission during energy stress
    DOI 10.1016/j.molcel.2024.06.009
    Type Journal Article
    Author Pilic J
    Journal Molecular Cell
    Link Publication
  • 2024
    Title Genetically encoded fluorescent sensor to monitor intracellular arginine methylation
    DOI 10.1016/j.jphotobiol.2024.112867
    Type Journal Article
    Author Zhang F
    Journal Journal of Photochemistry and Photobiology B: Biology
    Pages 112867
    Link Publication
  • 2024
    Title Advanced Oxidation Protein Products Are Strongly Associated with the Serum Levels and Lipid Contents of Lipoprotein Subclasses in Healthy Volunteers and Patients with Metabolic Syndrome
    DOI 10.3390/antiox13030339
    Type Journal Article
    Author Klobucar I
    Journal Antioxidants
    Pages 339
    Link Publication
  • 2024
    Title Interindividual differences in aronia juice tolerability linked to gut microbiome and metabolome changes—secondary analysis of a randomized placebo-controlled parallel intervention trial
    DOI 10.1186/s40168-024-01774-4
    Type Journal Article
    Author Lackner S
    Journal Microbiome
    Pages 49
    Link Publication
  • 2024
    Title Reduced olfactory performance is associated with changed microbial diversity, oralization, and accumulation of dead biomaterial in the nasal olfactory area
    DOI 10.1128/spectrum.01549-23
    Type Journal Article
    Author Kumpitsch C
    Journal Microbiology Spectrum
    Link Publication
  • 2023
    Title MetSCORE: A Molecular Metric to Evaluate the Risk of Metabolic Syndrome Based on Serum NMR Metabolomics
    DOI 10.2139/ssrn.4625798
    Type Preprint
    Author Conde R
  • 2023
    Title Loss of lysosomal acid lipase results in mitochondrial dysfunction and fiber switch in skeletal muscles of mice
    DOI 10.1016/j.molmet.2023.101869
    Type Journal Article
    Author Akhmetshina A
    Journal Molecular Metabolism
    Pages 101869
    Link Publication
  • 2023
    Title Disordered regions mediate the interaction of p53 and MRE11
    DOI 10.1016/j.bbamcr.2023.119654
    Type Journal Article
    Author Usluer S
    Journal Biochimica et Biophysica Acta (BBA) - Molecular Cell Research
    Pages 119654
    Link Publication
  • 2023
    Title HDL-Related Parameters and COVID-19 Mortality: The Importance of HDL Function
    DOI 10.3390/antiox12112009
    Type Journal Article
    Author Stadler J
    Journal Antioxidants
    Pages 2009
    Link Publication
  • 2023
    Title Low Valine Serum Levels Predict Increased 1-Year Mortality in Acute Heart Failure Patients
    DOI 10.3390/biom13091323
    Type Journal Article
    Author Klobucar I
    Journal Biomolecules
    Pages 1323
    Link Publication
  • 2023
    Title Altered gut microbiome, bile acid composition and metabolome in sarcopenia in liver cirrhosis
    DOI 10.1002/jcsm.13342
    Type Journal Article
    Author Aliwa B
    Journal Journal of Cachexia, Sarcopenia and Muscle
    Pages 2676-2691
    Link Publication
  • 2023
    Title Targeting epigenetic features in clear cell sarcomas based on patient-derived cell lines
    DOI 10.1186/s12967-022-03843-4
    Type Journal Article
    Author Karner C
    Journal Journal of Translational Medicine
    Pages 54
    Link Publication
  • 2022
    Title EGCG Promotes FUS Condensate Formation in a Methylation-Dependent Manner
    DOI 10.3390/cells11040592
    Type Journal Article
    Author Lenard A
    Journal Cells
    Pages 592
    Link Publication
  • 2022
    Title Oral Intake of L-Ornithine-L-Aspartate Is Associated with Distinct Microbiome and Metabolome Changes in Cirrhosis
    DOI 10.3390/nu14040748
    Type Journal Article
    Author Horvath A
    Journal Nutrients
    Pages 748
    Link Publication
  • 2022
    Title Fasting improves therapeutic response in hepatocellular carcinoma through p53-dependent metabolic synergism
    DOI 10.1126/sciadv.abh2635
    Type Journal Article
    Author Krstic J
    Journal Science Advances
    Link Publication
  • 2022
    Title HDL-apoA-II Is Strongly Associated with 1-Year Mortality in Acute Heart Failure Patients
    DOI 10.3390/biomedicines10071668
    Type Journal Article
    Author Klobucar I
    Journal Biomedicines
    Pages 1668
    Link Publication
  • 2022
    Title Lipoprotein Subclasses Independently Contribute to Subclinical Variance of Microvascular and Macrovascular Health
    DOI 10.20944/preprints202206.0299.v1
    Type Preprint
    Author Streese L
    Link Publication
  • 2022
    Title Phosphatidylethanolamine N-methyltransferase Knockout Modulates Metabolic Changes in Aging Mice
    DOI 10.20944/preprints202208.0159.v1
    Type Preprint
    Author Zhou Q
    Link Publication
  • 2022
    Title The PROVIT Study—Effects of Multispecies Probiotic Add-on Treatment on Metabolomics in Major Depressive Disorder—A Randomized, Placebo-Controlled Trial
    DOI 10.3390/metabo12080770
    Type Journal Article
    Author Kreuzer K
    Journal Metabolites
    Pages 770
    Link Publication
  • 2022
    Title Lipoprotein Subclasses Independently Contribute to Subclinical Variance of Microvascular and Macrovascular Health
    DOI 10.3390/molecules27154760
    Type Journal Article
    Author Streese L
    Journal Molecules
    Pages 4760
    Link Publication
  • 2022
    Title Hepatic p53 is regulated by transcription factor FOXO1 and acutely controls glycogen homeostasis
    DOI 10.1016/j.jbc.2022.102287
    Type Journal Article
    Author Oster M
    Journal Journal of Biological Chemistry
    Pages 102287
    Link Publication
  • 2022
    Title FOXO transcription factors differ in their dynamics and intra/intermolecular interactions
    DOI 10.1016/j.crstbi.2022.04.001
    Type Journal Article
    Author Spreitzer E
    Journal Current Research in Structural Biology
    Pages 118-133
    Link Publication
  • 2022
    Title p53 Regulates a miRNA-Fructose Transporter Axis in Brown Adipose Tissue Under Fasting
    DOI 10.3389/fgene.2022.913030
    Type Journal Article
    Author Reinisch I
    Journal Frontiers in Genetics
    Pages 913030
    Link Publication
  • 2022
    Title Alternative nutritional and clinical care practices for NEC prevention drive distinct profiles and functional responses in the preterm gut microbiome
    DOI 10.1101/2022.06.08.22276177
    Type Preprint
    Author Neumann C
    Pages 2022.06.08.22276177
    Link Publication
  • 2020
    Title Human Milk Oligosaccharides Modulate the Risk for Preterm Birth in a Microbiome-Dependent and -Independent Manner
    DOI 10.1128/msystems.00334-20
    Type Journal Article
    Author Pausan M
    Journal mSystems
    Link Publication
  • 2020
    Title Transgene integration causes RARB downregulation in homozygous Tg4–42 mice
    DOI 10.1038/s41598-020-63512-8
    Type Journal Article
    Author Hinteregger B
    Journal Scientific Reports
    Pages 6377
    Link Publication
  • 2020
    Title Nonclassical nuclear localization signals mediate nuclear import of CIRBP
    DOI 10.1073/pnas.1918944117
    Type Journal Article
    Author Bourgeois B
    Journal Proceedings of the National Academy of Sciences
    Pages 8503-8514
    Link Publication
  • 2020
    Title Probing Surfaces in Dynamic Protein Interactions
    DOI 10.1016/j.jmb.2020.02.032
    Type Journal Article
    Author Spreitzer E
    Journal Journal of Molecular Biology
    Pages 2949-2972
    Link Publication
  • 2019
    Title Human Milk Oligosaccharides modulate the risk for preterm birth in a microbiome dependent and independent manner
    DOI 10.1101/683714
    Type Preprint
    Author Pausan M
    Pages 683714
    Link Publication
  • 2019
    Title NMR characterization of solvent accessibility and transient structure in intrinsically disordered proteins
    DOI 10.1007/s10858-019-00248-2
    Type Journal Article
    Author Hartlmüller C
    Journal Journal of Biomolecular NMR
    Pages 305-317
    Link Publication
  • 2019
    Title Endothelial lipase increases antioxidative capacity of high-density lipoprotein
    DOI 10.1016/j.bbalip.2019.06.011
    Type Journal Article
    Author Schilcher I
    Journal Biochimica et Biophysica Acta (BBA) - Molecular and Cell Biology of Lipids
    Pages 1363-1374
    Link Publication
  • 2019
    Title Acetyl-CoA carboxylase 1–dependent lipogenesis promotes autophagy downstream of AMPK
    DOI 10.1074/jbc.ra118.007020
    Type Journal Article
    Author Gross A
    Journal Journal of Biological Chemistry
    Pages 12020-12039
    Link Publication
  • 2019
    Title A single alcohol binge impacts on neutrophil function without changes in gut barrier function and gut microbiome composition in healthy volunteers
    DOI 10.1371/journal.pone.0211703
    Type Journal Article
    Author Stadlbauer V
    Journal PLOS ONE
    Link Publication
  • 2019
    Title A small molecule chaperone rescues the stability and activity of a cancer-associated variant of NAD(P)H:quinone oxidoreductase 1 in vitro
    DOI 10.1002/1873-3468.13636
    Type Journal Article
    Author Strandback E
    Journal FEBS Letters
    Pages 424-438
    Link Publication
  • 2019
    Title Cysteine oxidation triggers amyloid fibril formation of the tumor suppressor p16INK4A
    DOI 10.1016/j.redox.2019.101316
    Type Journal Article
    Author Göbl C
    Journal Redox Biology
    Pages 101316
    Link Publication
  • 2019
    Title Structure of an RNA aptamer in complex with the fluorophore tetramethylrhodamine
    DOI 10.1093/nar/gkz1113
    Type Journal Article
    Author Duchardt-Ferner E
    Journal Nucleic Acids Research
    Pages 949-961
    Link Publication
  • 2018
    Title Saxagliptin but Not Sitagliptin Inhibits CaMKII and PKC via DPP9 Inhibition in Cardiomyocytes
    DOI 10.3389/fphys.2018.01622
    Type Journal Article
    Author Koyani C
    Journal Frontiers in Physiology
    Pages 1622
    Link Publication
  • 2018
    Title Chapter 10 Small Paramagnetic Co-solute Molecules
    DOI 10.1039/9781788013291-00283
    Type Book Chapter
    Author Madl T
    Publisher Royal Society of Chemistry (RSC)
    Pages 283-309
  • 2021
    Title Global analysis of protein arginine methylation
    DOI 10.1101/2021.01.25.428036
    Type Preprint
    Author Zhang F
    Pages 2021.01.25.428036
    Link Publication
  • 2021
    Title ATP regulates RNA-driven cold inducible RNA binding protein phase separation
    DOI 10.1002/pro.4123
    Type Journal Article
    Author Zhou Q
    Journal Protein Science
    Pages 1438-1453
    Link Publication
  • 2021
    Title Potassium ions promote hexokinase-II dependent glycolysis
    DOI 10.1016/j.isci.2021.102346
    Type Journal Article
    Author Bischof H
    Journal iScience
    Pages 102346
    Link Publication
  • 2021
    Title Dietary spermidine improves cognitive function
    DOI 10.1016/j.celrep.2021.108985
    Type Journal Article
    Author Schroeder S
    Journal Cell Reports
    Pages 108985
    Link Publication
  • 2021
    Title Growing Human Hepatocellular Tumors Undergo a Global Metabolic Reprogramming
    DOI 10.3390/cancers13081980
    Type Journal Article
    Author Zhang F
    Journal Cancers
    Pages 1980
    Link Publication
  • 2021
    Title Endothelial Lipase Modulates Paraoxonase 1 Content and Arylesterase Activity of HDL.
    DOI 10.3390/ijms22020719
    Type Journal Article
    Author Schilcher I
    Journal International journal of molecular sciences
  • 2021
    Title Additional file 11 of Reduced B12 uptake and increased gastrointestinal formate are associated with archaeome-mediated breath methane emission in humans
    DOI 10.6084/m9.figshare.16680127.v1
    Type Other
    Author Fischmeister F
    Link Publication
  • 2021
    Title Additional file 11 of Reduced B12 uptake and increased gastrointestinal formate are associated with archaeome-mediated breath methane emission in humans
    DOI 10.6084/m9.figshare.16680127
    Type Other
    Author Fischmeister F
    Link Publication
  • 2021
    Title Additional file 4 of Reduced B12 uptake and increased gastrointestinal formate are associated with archaeome-mediated breath methane emission in humans
    DOI 10.6084/m9.figshare.16680136.v1
    Type Other
    Author Fischmeister F
    Link Publication
  • 2021
    Title Additional file 4 of Reduced B12 uptake and increased gastrointestinal formate are associated with archaeome-mediated breath methane emission in humans
    DOI 10.6084/m9.figshare.16680136
    Type Other
    Author Fischmeister F
    Link Publication
  • 2021
    Title Additional file 2 of Reduced B12 uptake and increased gastrointestinal formate are associated with archaeome-mediated breath methane emission in humans
    DOI 10.6084/m9.figshare.16680130
    Type Other
    Author Fischmeister F
    Link Publication
  • 2021
    Title Additional file 2 of Reduced B12 uptake and increased gastrointestinal formate are associated with archaeome-mediated breath methane emission in humans
    DOI 10.6084/m9.figshare.16680130.v1
    Type Other
    Author Fischmeister F
    Link Publication
  • 2020
    Title Nuclear Import Receptors Directly Bind to Arginine-Rich Dipeptide Repeat Proteins and Suppress Their Pathological Interactions
    DOI 10.1016/j.celrep.2020.108538
    Type Journal Article
    Author Hutten S
    Journal Cell Reports
    Pages 108538
    Link Publication
  • 2020
    Title Tissue-Specific Landscape of Metabolic Dysregulation during Ageing
    DOI 10.20944/preprints202012.0174.v1
    Type Preprint
    Author Zhang F
    Link Publication
  • 2020
    Title ß-catenin regulates FOXP2 transcriptional activity via multiple binding sites
    DOI 10.1111/febs.15656
    Type Journal Article
    Author Richter G
    Journal The FEBS Journal
    Pages 3261-3284
    Link Publication
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    Title Quantification of arginine methylation
    Type Technology assay or reagent
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    Title Editorial board member Scientific Reports
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    Title F&E Infrastrukturförderung - Next-generation X-ray platform for integrative structural biology
    Type Capital/infrastructure (including equipment)
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