Ultra-short acquisition delay 3D Spectroscopic Imaging
Ultra-short acquisition delay 3D Spectroscopic Imaging
Disciplines
Clinical Medicine (50%); Medical Engineering (50%)
Keywords
-
Ultra-High Magnetic Field,
Magnetic Resonance Spectroscopy,
Brain
Proton magnetic resonance spectroscopic imaging (MRSI) enables the non-invasive imaging of local changes in brain neurochemistry that underlie many brain diseases. Our goal is to develop an improved MRSI method for the robust whole brain-mapping of a comprehensive number of chemical compounds. Commonly available MRSI methods share several methodical limitations, which include the following: (a) a low spatial resolution; (b) limited brain coverage; (c) vulnerability to artifacts; (d) substantial problems with localization accuracy; (e) quantification of only a limited number of neurochemical compounds. To make MRSI a powerful clinical/neuro-scientific imaging tool, these limitations have to be overcome. Robust whole-brain-MRSI must provide accurate mapping of a comprehensive neurochemical profile with higher spatial resolution. Such MR imaging methods will be valuable tools for clinical and neuro-scientific investigations of various pathologies such as MS, tumors, or neurodegenerative diseases. We hypothesize that: (a) methods that accelerate data sampling can be combined to allow for high-resolution whole-brain MRSI within clinically feasible scan times; (b) real-time artifact correction will allow robust MRSI acquisition with reproducible results for clinical/neuro- scientific application; and (c) imaging of an extended number of neurochemical compounds will facilitate the understanding of complex neurochemical alterations underlying major brain pathologies. So far only one research group has established an MRSI sequence with whole brain coverage, but only for lower field strength and using methods that are less sensitive to most chemical compounds. No implementation for high field strengths exists, because of technical limitations. Based on our preliminary sequence development, we will develop a whole brain MRSI technique that: (a) can be used also at ultra-high field; (b) will allow mapping of more chemical compounds; (c) will be far more sensitive than previous approaches; (d) will allow a higher spatial resolution; and (e) will be more robust than available techniques. The successful completion of the project will, therefore, permit the development of a new inherently multi-parametric neuroimaging technique that can be a powerful tool for clinical and neuro-scientific investigations.
In this project we have developed a whole-brain imaging technique that is able to map the concentrations of multiple biochemical substances within the human brain in clinically attractive measurement times. This has a high potential for an array of clinical applications, because local or widespread changes in brain biochemistry are ubiquitous and important in many major brain disorders. However, the acquired raw data are enormous and consequently the processing times to turn these raw data into concentrations maps are still very long, which limit currently the use of these techniques for routine use. Nevertheless, we have performed initial clinical evaluations in a cohort of patients with brain tumors and Multiple Sclerosis with promising results. In follow-up studies we will focus on a better integration of these new neurochemical imaging techniques on the magnetic resonance scanners and improved robustness to enable a user-friendly application in a clinical environment.
Research Output
- 1488 Citations
- 45 Publications
- 6 Datasets & models
-
2024
Title Terminology and concepts for the characterization of in vivo MR spectroscopy methods and MR spectra: Background and experts' consensus recommendations. DOI 10.7892/boris.146096 Type Journal Article Author Boer Link Publication -
2024
Title Minimum Reporting Standards for in vivo Magnetic Resonance Spectroscopy (MRSinMRS): Experts' consensus recommendations DOI 10.48350/152082 Type Journal Article Author Andronesi Link Publication -
2025
Title A Flow-based Truncated Denoising Diffusion Model for super-resolution Magnetic Resonance Spectroscopic Imaging. DOI 10.1016/j.media.2024.103358 Type Journal Article Author Cai Z Journal Medical image analysis Pages 103358 -
2018
Title Super-Resolution 1H Magnetic Resonance Spectroscopic Imaging utilizing Deep Learning DOI 10.48550/arxiv.1802.07909 Type Preprint Author Iqbal Z -
2021
Title k-Space-based coil combination via geometric deep learning for reconstruction of non-Cartesian MRSI data DOI 10.1002/mrm.28876 Type Journal Article Author Motyka S Journal Magnetic Resonance in Medicine Pages 2353-2367 -
2021
Title Inter-subject stability and regional concentration estimates of 3D-FID-MRSI in the human brain at 7 T DOI 10.1002/nbm.4596 Type Journal Article Author Hangel G Journal NMR in Biomedicine Link Publication -
2021
Title Minimum Reporting Standards for in vivo Magnetic Resonance Spectroscopy (MRSinMRS): Experts' consensus recommendations DOI 10.1002/nbm.4484 Type Journal Article Author Lin A Journal NMR in Biomedicine Link Publication -
2021
Title Effects of SSRI treatment on GABA and glutamate levels in an associative relearning paradigm DOI 10.1016/j.neuroimage.2021.117913 Type Journal Article Author Spurny B Journal NeuroImage Pages 117913 Link Publication -
2020
Title Spectral editing in 1H magnetic resonance spectroscopy: Experts' consensus recommendations DOI 10.1002/nbm.4411 Type Journal Article Author Choi I Journal NMR in Biomedicine Link Publication -
2020
Title High-resolution metabolic imaging of high-grade gliomas using 7T-CRT-FID-MRSI DOI 10.1016/j.nicl.2020.102433 Type Journal Article Author Hangel G Journal NeuroImage: Clinical Pages 102433 Link Publication -
2020
Title Effect of Ketamine on Limbic GABA and Glutamate: A Human In Vivo Multivoxel Magnetic Resonance Spectroscopy Study DOI 10.3389/fpsyt.2020.549903 Type Journal Article Author Silberbauer L Journal Frontiers in Psychiatry Pages 549903 Link Publication -
2020
Title Editorial for “Whole-Slab 3D MR Spectroscopic Imaging of the Human Brain With Spiral-Out-In Sampling at 7T” DOI 10.1002/jmri.27443 Type Journal Article Author Lee D Journal Journal of Magnetic Resonance Imaging Pages 1251-1252 -
2019
Title 7 T Magnetic Resonance Spectroscopic Imaging in Multiple Sclerosis DOI 10.1097/rli.0000000000000531 Type Journal Article Author Heckova E Journal Investigative Radiology Link Publication -
2019
Title Effects of different macromolecular models on reproducibility of FID-MRSI at 7T DOI 10.1002/mrm.27922 Type Journal Article Author Heckova E Journal Magnetic Resonance in Medicine Pages 12-21 Link Publication -
2019
Title Automated ROI-Based Labeling for Multi-Voxel Magnetic Resonance Spectroscopy Data Using FreeSurfer DOI 10.3389/fnmol.2019.00028 Type Journal Article Author Spurny B Journal Frontiers in Molecular Neuroscience Pages 28 Link Publication -
2019
Title High-resolution metabolic mapping of gliomas via patch-based super-resolution magnetic resonance spectroscopic imaging at 7T DOI 10.1016/j.neuroimage.2019.02.023 Type Journal Article Author Hangel G Journal NeuroImage Pages 587-595 Link Publication -
2019
Title The influence of spatial resolution on the spectral quality and quantification accuracy of whole-brain MRSI at 1.5T, 3T, 7T, and 9.4T DOI 10.1002/mrm.27746 Type Journal Article Author Motyka S Journal Magnetic Resonance in Medicine Pages 551-565 Link Publication -
2019
Title Super-Resolution 1H Magnetic Resonance Spectroscopic Imaging Utilizing Deep Learning DOI 10.3389/fonc.2019.01010 Type Journal Article Author Iqbal Z Journal Frontiers in Oncology Pages 1010 Link Publication -
2019
Title Intra-session and inter-subject variability of 3D-FID-MRSI using single-echo volumetric EPI navigators at 3T DOI 10.1002/mrm.28076 Type Journal Article Author Moser P Journal Magnetic Resonance in Medicine Pages 1920-1929 Link Publication -
2018
Title Whole-slice mapping of GABA and GABA+ at 7T via adiabatic MEGA-editing, real-time instability correction, and concentric circle readout DOI 10.1016/j.neuroimage.2018.09.039 Type Journal Article Author Moser P Journal NeuroImage Pages 475-489 Link Publication -
2020
Title Whole-Slab 3D MR Spectroscopic Imaging of the Human Brain With Spiral-Out-In Sampling at 7T DOI 10.1002/jmri.27437 Type Journal Article Author Esmaeili M Journal Journal of Magnetic Resonance Imaging Pages 1237-1250 Link Publication -
2020
Title Terminology and concepts for the characterization of in vivo MR spectroscopy methods and MR spectra: Background and experts' consensus recommendations DOI 10.1002/nbm.4347 Type Journal Article Author Kreis R Journal NMR in Biomedicine Link Publication -
2020
Title Motion correction methods for MRS: experts' consensus recommendations DOI 10.1002/nbm.4364 Type Journal Article Author Andronesi O Journal NMR in Biomedicine Link Publication -
2020
Title Water and lipid suppression techniques for advanced 1H MRS and MRSI of the human brain: Experts' consensus recommendations DOI 10.1002/nbm.4459 Type Journal Article Author Tkác I Journal NMR in Biomedicine Link Publication -
2020
Title Advanced magnetic resonance spectroscopic neuroimaging: Experts' consensus recommendations DOI 10.1002/nbm.4309 Type Journal Article Author Maudsley A Journal NMR in Biomedicine Link Publication -
2020
Title Accelerated MR spectroscopic imaging—a review of current and emerging techniques DOI 10.1002/nbm.4314 Type Journal Article Author Bogner W Journal NMR in Biomedicine Link Publication -
2019
Title Non-Cartesian GRAPPA and coil combination using interleaved calibration data – application to concentric-ring MRSI of the human brain at 7T DOI 10.1002/mrm.27822 Type Journal Article Author Moser P Journal Magnetic Resonance in Medicine Pages 1587-1603 Link Publication -
2019
Title Accelerated Magnetic Resonance Spectroscopic Imaging at 7 Tesla via Concentric Ring Trajectories for Mapping of Brain Metabolites Type PhD Thesis Author Lukas Hingerl -
2023
Title The influence of season on glutamate and GABA levels in the healthy human brain investigated by magnetic resonance spectroscopy imaging. DOI 10.1002/hbm.26236 Type Journal Article Author Reed Mb Journal Human brain mapping Pages 2654-2663 -
2023
Title 1H magnetic resonance spectroscopic imaging of deuterated glucose and of neurotransmitter metabolism at 7T in the human brain. DOI 10.1038/s41551-023-01035-z Type Journal Article Author Bednarik P Journal Nature biomedical engineering Pages 1001-1013 -
2020
Title Contribution of macromolecules to brain 1H MR spectra: Experts' consensus recommendations DOI 10.1002/nbm.4393 Type Journal Article Author Cudalbu C Journal NMR in Biomedicine Link Publication -
2022
Title 7T HR FID-MRSI Compared to Amino Acid PET: Glutamine and Glycine as Promising Biomarkers in Brain Tumors DOI 10.3390/cancers14092163 Type Journal Article Author Hangel G Journal Cancers Pages 2163 Link Publication -
2022
Title Flow-based Visual Quality Enhancer for Super-resolution Magnetic Resonance Spectroscopic Imaging DOI 10.48550/arxiv.2207.10181 Type Preprint Author Dong S -
2022
Title The Impact of Theta-Burst Stimulation on Cortical GABA and Glutamate in Treatment-Resistant Depression: A Surface-Based MRSI Analysis Approach DOI 10.3389/fnmol.2022.913274 Type Journal Article Author Spurny-Dworak B Journal Frontiers in Molecular Neuroscience Pages 913274 Link Publication -
2022
Title Lesion-Specific Metabolic Alterations in Relapsing-Remitting Multiple Sclerosis Via 7 T Magnetic Resonance Spectroscopic Imaging DOI 10.1097/rli.0000000000000913 Type Journal Article Author Lipka A Journal Investigative Radiology Pages 156-165 Link Publication -
2021
Title Deuterium labeling enables non-invasive 3D proton MR imaging of glucose and neurotransmitter metabolism in the human brain DOI 10.21203/rs.3.rs-1027370/v1 Type Preprint Author Bednarik P Link Publication -
2021
Title 3D localized lactate detection in muscle tissue using double-quantum filtered 1H MRS with adiabatic refocusing pulses at 7 T DOI 10.1002/mrm.29061 Type Journal Article Author Niess F Journal Magnetic Resonance in Medicine Pages 1174-1183 Link Publication -
2021
Title Emerging methods and applications of ultra-high field MR spectroscopic imaging in the human brain DOI 10.1016/j.ab.2021.114479 Type Journal Article Author Hangel G Journal Analytical Biochemistry Pages 114479 Link Publication -
2022
Title Improving Magnetic Resonance Spectroscopy Imaging during Acquisitions and Post-processing via Deep Learning Type PhD Thesis Author Stanislav Motyka -
2022
Title Deuterium labeling enables non-invasive 3D proton MR imaging of glucose and neurotransmitter metabolism in the human brain DOI 10.58530/2022/0630 Type Conference Proceeding Abstract Author Bednarik P Link Publication -
2023
Title Metabolic Insights into Iron Deposition in Relapsing-Remitting Multiple Sclerosis via 7T Magnetic Resonance Spectroscopic Imaging. DOI 10.1016/j.nicl.2023.103524 Type Journal Article Author Bogner W Journal NeuroImage. Clinical Pages 103524 -
2019
Title Clinical High-Resolution 3D-MR Spectroscopic Imaging of the Human Brain at 7 T. DOI 10.1097/rli.0000000000000626 Type Journal Article Author Hingerl L Journal Investigative radiology Pages 239-248 -
2022
Title Flow-Based Visual Quality Enhancer for Super-Resolution Magnetic Resonance Spectroscopic Imaging DOI 10.1007/978-3-031-18576-2_1 Type Book Chapter Author Dong S Publisher Springer Nature Pages 3-13 -
2022
Title The impact of theta-burst stimulation on cortical GABA and glutamate in treatment-resistant depression: A surface-based MRSI analysis approach DOI 10.1101/2022.02.17.22271118 Type Preprint Author Spurny-Dworak B Pages 2022.02.17.22271118 Link Publication -
2022
Title Extensive Brain Pathologic Alterations Detected with 7.0-T MR Spectroscopic Imaging Associated with Disability in Multiple Sclerosis DOI 10.1148/radiol.210614 Type Journal Article Author Heckova E Journal Radiology Pages 141-150
-
2020
Link
Title Supplementary MRSI Data for "High-Resolution Metabolic Imaging of High-Grade Gliomas using 7T-CRT-FID-MRSI" - NIFTI Format FIXED DOI 10.5281/zenodo.3981030 Type Database/Collection of data Public Access Link Link -
2020
Link
Title Supplementary MRSI Data for "High-Resolution Metabolic Imaging of High-Grade Gliomas using 7T-CRT-FID-MRSI" - NIFTI Format FIXED DOI 10.5281/zenodo.3903459 Type Database/Collection of data Public Access Link Link -
2020
Link
Title Supplementary MRSI Data for "High-Resolution Metabolic Imaging of High-Grade Gliomas using 7T-CRT-FID-MRSI" - NIFTI Format DOI 10.5281/zenodo.3981029 Type Database/Collection of data Public Access Link Link -
2020
Link
Title Supplementary MRSI Data for "High-Resolution Metabolic Imaging of High-Grade Gliomas using 7T-CRT-FID-MRSI" - MINC Format DOI 10.5281/zenodo.3903460 Type Database/Collection of data Public Access Link Link -
2020
Link
Title 7T MRSI (HFMRC, MU Vienna) Example Data: Raw Spectra DOI 10.5281/zenodo.3904584 Type Database/Collection of data Public Access Link Link -
2020
Link
Title 7T MRSI (HFMRC, MU Vienna) Example Data: Raw Spectra DOI 10.5281/zenodo.3904583 Type Database/Collection of data Public Access Link Link